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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS01200 and RR42_RS01205 are separated by 29 nucleotides
RR42_RS01205 and RR42_RS01210 are separated by 145 nucleotides
RR42_RS01210 and RR42_RS01215 are separated by 78 nucleotides
RR42_RS01215 and RR42_RS01220 are separated by 30 nucleotides
RR42_RS01200: RR42_RS01200 - hypothetical protein, at 274,336 to 275,145
_RS01200
RR42_RS01205: RR42_RS01205 - transposase, at 275,175 to 275,579
_RS01205
RR42_RS01210: RR42_RS01210 - n-acetyl-gamma-glutamyl-phosphate reductase, at 275,725 to 276,672
_RS01210
RR42_RS01215: RR42_RS01215 - hypothetical protein, at 276,751 to 276,939
_RS01215
RR42_RS01220: RR42_RS01220 - exodeoxyribonuclease III, at 276,970 to 277,746
_RS01220
Group
Condition
RR42
_RS01200
RR42
_RS01205
RR42
_RS01210
RR42
_RS01215
RR42
_RS01220
lb
LB
N.D.
N.D.
-0.3
-1.0
-2.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
N.D.
-0.7
-0.0
-1.6
stress
R2A with Cobalt chloride 0.5 mM
N.D.
N.D.
-1.2
-0.3
-0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
N.D.
N.D.
-1.6
-0.3
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
N.D.
-0.8
-0.6
-0.4
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
N.D.
-1.0
-0.8
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
N.D.
-0.9
-0.2
-0.4
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
N.D.
N.D.
-0.9
-0.1
-0.5
nitrogen source
L-Glutamine (N)
N.D.
N.D.
-2.0
+0.7
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
N.D.
-0.1
-0.0
-1.0
carbon source
L-Histidine (C)
N.D.
N.D.
-0.4
-0.3
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
N.D.
-0.4
-0.1
-0.5
carbon source
Valeric (C)
N.D.
N.D.
-0.7
-0.4
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
N.D.
-0.3
-0.3
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
N.D.
-0.2
+0.1
-0.8
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
N.D.
-0.5
-0.5
+0.2
carbon source
L-Glutamine (C)
N.D.
N.D.
-0.3
-0.6
+0.1
nitrogen source
L-Leucine (N)
N.D.
N.D.
+0.3
-0.6
-0.3
carbon source
adipate (C)
N.D.
N.D.
-1.3
+0.5
+0.2
stress
R2A with Lomefloxacin 0.00075 mM
N.D.
N.D.
-0.8
+0.3
-0.0
carbon source
Octanoic (C)
N.D.
N.D.
+0.4
-0.2
-0.4
stress
R2A with Thallium(I) acetate 0.001 mg/ml
N.D.
N.D.
+0.2
-0.5
+0.3
nitrogen source
Glucuronamide (N)
N.D.
N.D.
-0.5
+0.5
-0.1
carbon source
Valeric (C)
N.D.
N.D.
-0.6
+0.3
+0.2
carbon source
D-Fructose (C)
N.D.
N.D.
+0.5
-0.2
+0.4
carbon source
Azelaic (C)
N.D.
N.D.
-0.1
+0.5
+0.5
carbon source
Disodium Glutarate (C)
N.D.
N.D.
+0.4
+0.3
+0.3
nitrogen source
D-Alanine (N)
N.D.
N.D.
+0.6
+0.3
+0.2
nitrogen source
L-Serine (N)
N.D.
N.D.
+0.6
+0.4
+0.1
carbon source
Protocatechuic Acid (C)
N.D.
N.D.
+0.9
+0.4
-0.0
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