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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS01175 and RR42_RS01180 are separated by 100 nucleotides
RR42_RS01180 and RR42_RS01185 are separated by 157 nucleotides
RR42_RS01185 and RR42_RS01190 are separated by 246 nucleotides
RR42_RS01190 and RR42_RS01195 are separated by 75 nucleotides
RR42_RS01175: RR42_RS01175 - membrane protein, at 269,239 to 270,183
_RS01175
RR42_RS01180: RR42_RS01180 - acyl-CoA thioesterase, at 270,284 to 271,114
_RS01180
RR42_RS01185: RR42_RS01185 - muropeptide transporter, at 271,272 to 272,528
_RS01185
RR42_RS01190: RR42_RS01190 - peptidase M48, at 272,775 to 273,722
_RS01190
RR42_RS01195: RR42_RS01195 - excinuclease ATPase, at 273,798 to 274,271
_RS01195
Group
Condition
RR42
_RS01175
RR42
_RS01180
RR42
_RS01185
RR42
_RS01190
RR42
_RS01195
stress
R2A with copper (II) chloride 0.25 mM
+0.1
+0.5
-3.6
-0.1
+0.2
carbon source
Pimelic (C)
+0.0
-0.1
-1.8
-0.1
-0.8
carbon source
adipate (C)
+0.1
-0.1
-2.2
-0.1
-0.1
carbon source
Octanoic (C)
-0.1
-0.1
-1.0
-0.5
-0.6
nitrogen source
Glycine (N)
-0.1
-0.6
-1.2
-0.3
+0.0
carbon source
Disodium Glutarate (C)
-0.2
-0.1
-2.0
-0.3
+0.7
carbon source
Disodium Glutarate (C)
+0.2
-0.1
-2.2
+0.3
+0.1
stress
R2A with nitrate 150 mM
-0.0
-0.2
-1.7
+0.5
-0.1
carbon source
Pimelic (C)
+0.1
+0.0
-1.8
-0.3
+0.4
carbon source
adipate (C)
-0.1
-0.2
-1.5
-0.1
+0.5
stress
R2A with Nickel (II) chloride 0.5 mM
+0.1
+0.3
-1.1
-0.2
-0.4
stress
R2A with nitrate 200 mM
+0.2
-0.2
-0.9
+0.3
-0.5
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
+0.3
-2.1
+0.5
+0.3
stress
R2A with Cobalt chloride 0.5 mM
+0.3
-0.6
-1.2
+0.2
+0.6
nitrogen source
nitrate (N)
+0.4
-0.6
-0.3
+0.2
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
+0.7
-0.0
+0.0
-1.3
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
-0.2
+0.5
+0.4
-1.1
stress
R2A with A22 0.01 mg/ml
+0.3
+0.1
-1.3
+0.4
+0.2
stress
R2A with Zinc 0.1 mM
-0.1
+0.5
+0.5
-1.6
+0.4
stress
R2A with Lomefloxacin 0.00075 mM
+0.1
+0.4
+0.3
+0.2
-0.9
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
-0.6
-0.2
+0.5
+0.3
stress
R2A with Chlorite 4 mM
+0.1
+0.4
-0.4
+0.6
-0.3
stress
R2A with Chloride 300 mM
+0.1
+0.2
-0.8
+0.4
+0.5
stress
R2A with Cephalothin 0.25 mg/ml
+0.1
+0.8
-0.9
+0.2
+0.3
stress
R2A with nitrate 200 mM
+0.3
+0.4
-1.1
+0.3
+0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.9
+0.8
+0.7
+0.0
carbon source
Valeric (C)
+0.2
-0.2
+0.6
-0.3
+0.8
carbon source
Ethanol (C)
+0.4
+0.2
-0.4
+0.3
+0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.5
+1.0
-0.2
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.1
+1.0
+0.6
-0.2
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