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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS01095 and RR42_RS01100 are separated by 35 nucleotides
RR42_RS01100 and RR42_RS01105 are separated by 94 nucleotides
RR42_RS01105 and RR42_RS01110 are separated by 0 nucleotides
RR42_RS01110 and RR42_RS01115 overlap by 4 nucleotides
RR42_RS01095: RR42_RS01095 - membrane protein, at 255,891 to 256,370
_RS01095
RR42_RS01100: RR42_RS01100 - LysR family transcriptional regulator, at 256,406 to 257,341
_RS01100
RR42_RS01105: RR42_RS01105 - membrane protein, at 257,436 to 257,948
_RS01105
RR42_RS01110: RR42_RS01110 - hypothetical protein, at 257,949 to 258,176
_RS01110
RR42_RS01115: RR42_RS01115 - hypothetical protein, at 258,173 to 258,400
_RS01115
Group
Condition
RR42
_RS01095
RR42
_RS01100
RR42
_RS01105
RR42
_RS01110
RR42
_RS01115
stress
R2A with Vancomycin 0.5 mg/ml
-2.3
-0.4
-0.3
N.D.
N.D.
carbon source
Octanoic (C)
-2.4
-0.2
-0.2
N.D.
N.D.
stress
R2A with Chloride 300 mM
-1.1
-0.9
-0.2
N.D.
N.D.
carbon source
Heptanoic (C)
-1.9
-0.0
-0.1
N.D.
N.D.
carbon source
Pimelic (C)
-1.9
-0.2
+0.1
N.D.
N.D.
carbon source
D,L-Lactate (C)
-1.1
-0.5
-0.3
N.D.
N.D.
carbon source
Dodecandioic (C)
-0.9
-0.0
-0.7
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-0.2
-1.1
-0.3
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
-1.2
-0.1
-0.3
N.D.
N.D.
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-1.4
-0.4
+0.3
N.D.
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-1.1
-0.7
+0.4
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.8
-0.7
+0.2
N.D.
N.D.
carbon source
Hexanoic (C)
-1.2
-0.5
+0.5
N.D.
N.D.
carbon source
Pimelic (C)
-1.0
-0.4
+0.3
N.D.
N.D.
stress
R2A with Cephalothin 0.25 mg/ml
-1.1
+0.2
-0.4
N.D.
N.D.
nitrogen source
Glucuronamide (N)
-1.4
-0.0
+0.3
N.D.
N.D.
carbon source
L-Leucine (C)
-0.7
-0.6
+0.2
N.D.
N.D.
nitrogen source
L-Lysine (N)
-1.4
-0.0
+0.5
N.D.
N.D.
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-1.0
+0.1
+0.3
N.D.
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-0.9
+0.5
+0.5
N.D.
N.D.
stress
R2A with Cobalt chloride 0.5 mM
+1.0
-0.2
-0.3
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+2.0
+0.2
-0.6
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+1.5
+0.1
+0.0
N.D.
N.D.
lb
LB
+1.3
+0.1
+0.3
N.D.
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
+1.9
+0.2
+0.2
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+2.7
-0.7
+0.5
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+2.6
-0.2
+0.4
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+2.9
+0.6
-0.4
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+2.6
+0.1
+0.5
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+3.0
-0.3
+1.0
N.D.
N.D.
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