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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS01055 and RR42_RS01060 are separated by 242 nucleotides
RR42_RS01060 and RR42_RS01065 are separated by 92 nucleotides
RR42_RS01065 and RR42_RS01070 are separated by 79 nucleotides
RR42_RS01070 and RR42_RS01075 are separated by 294 nucleotides
RR42_RS01055: RR42_RS01055 - ABC transporter substrate-binding protein, at 248,416 to 249,402
_RS01055
RR42_RS01060: RR42_RS01060 - peptidase, at 249,645 to 250,181
_RS01060
RR42_RS01065: RR42_RS01065 - ATP-dependent protease ATP-binding subunit HslU, at 250,274 to 251,605
_RS01065
RR42_RS01070: RR42_RS01070 - nuclear export factor GLE1, at 251,685 to 252,197
_RS01070
RR42_RS01075: RR42_RS01075 - hypothetical protein, at 252,492 to 253,073
_RS01075
Group
Condition
RR42
_RS01055
RR42
_RS01060
RR42
_RS01065
RR42
_RS01070
RR42
_RS01075
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.3
-0.3
-1.2
-0.2
-0.1
carbon source
Protocatechuic Acid (C)
-0.6
-0.5
-0.4
-0.4
-0.1
nitrogen source
L-Glutamine (N)
+0.2
-0.6
-0.3
-0.3
-1.1
carbon source
Valeric (C)
-0.2
-0.4
-0.4
-0.3
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.1
-0.4
-0.8
+0.1
-0.2
carbon source
D-Lactate (C)
-0.5
-0.4
-0.4
+0.0
+0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.2
-0.4
-0.2
+0.2
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.1
-0.2
-0.0
-0.5
stress
R2A with Nickel (II) chloride 0.25 mM
+0.0
-0.5
-0.7
-0.0
+0.3
lb
LB
-0.0
-0.9
-0.3
-0.4
+0.7
carbon source
Heptanoic (C)
+0.0
-0.5
-0.6
-0.2
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.5
-0.7
+0.2
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
-0.0
+0.2
-0.4
-0.4
nitrogen source
nitrite (N)
+0.1
-0.4
-0.4
+0.3
-0.3
temperature
R2A 37C
+0.2
-0.4
-0.4
-0.1
-0.1
carbon source
Heptanoic (C)
+0.2
-0.4
-0.5
-0.1
+0.1
carbon source
Protocatechuic Acid (C)
-0.3
-0.4
-0.1
-0.2
+0.2
carbon source
Valeric (C)
+0.1
-0.3
-0.6
+0.3
-0.2
carbon source
Suberic (C)
-0.1
+0.2
+0.2
-0.5
-0.4
stress
R2A with Chlorite 4 mM
+0.3
-0.3
-0.3
+0.1
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.4
-0.1
-0.1
-0.3
+0.3
stress
R2A with Sisomicin 0.035 mg/ml
+0.2
-0.3
-0.6
+0.0
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.3
-0.2
-0.1
+0.4
stress
R2A with nitrate 150 mM
-0.1
-0.3
-0.3
+0.3
+0.3
stress
R2A with Zinc 0.1 mM
+0.2
-0.4
-0.4
+0.3
+0.2
carbon source
L-Proline (C)
-0.5
+0.2
+0.3
-0.1
+0.2
carbon source
a-Ketoglutaric (C)
-0.5
+0.1
+0.1
+0.3
+0.1
carbon source
Azelaic (C)
+0.1
+0.3
+0.3
-0.2
-0.3
stress
R2A with copper (II) chloride 0.25 mM
+0.1
+0.3
+0.5
-0.1
+0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.1
+0.3
+0.4
+0.3
+0.1
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