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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS01025 and RR42_RS01030 are separated by 253 nucleotides
RR42_RS01030 and RR42_RS01035 overlap by 2 nucleotides
RR42_RS01035 and RR42_RS01040 are separated by 282 nucleotides
RR42_RS01040 and RR42_RS01045 are separated by 101 nucleotides
RR42_RS01025: RR42_RS01025 - GTPase, at 242,771 to 244,066
_RS01025
RR42_RS01030: RR42_RS01030 - molecular chaperone DnaK, at 244,320 to 244,739
_RS01030
RR42_RS01035: RR42_RS01035 - hypothetical protein, at 244,738 to 245,046
_RS01035
RR42_RS01040: RR42_RS01040 - cobalamin biosynthesis protein CobW, at 245,329 to 246,417
_RS01040
RR42_RS01045: RR42_RS01045 - Fur family transcriptional regulator, at 246,519 to 247,040
_RS01045
Group
Condition
RR42
_RS01025
RR42
_RS01030
RR42
_RS01035
RR42
_RS01040
RR42
_RS01045
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.7
N.D.
N.D.
-0.2
-1.2
carbon source
pyruvate (C)
+0.2
N.D.
N.D.
-0.8
-1.2
carbon source
Heptanoic (C)
-0.1
N.D.
N.D.
+0.1
-1.5
carbon source
Carbon source Phenylacetic 2.5 mM
-0.5
N.D.
N.D.
+0.0
-1.1
stress
R2A with Cisplatin 0.001 mg/ml
-1.9
N.D.
N.D.
+0.0
+0.6
carbon source
Pimelic (C)
-0.8
N.D.
N.D.
-0.2
-0.2
nitrogen source
nitrate (N)
-0.2
N.D.
N.D.
+0.0
-1.0
carbon source
propionate (C)
-0.0
N.D.
N.D.
-1.2
+0.0
carbon source
adipate (C)
-1.2
N.D.
N.D.
-0.3
+0.4
carbon source
Protocatechuic Acid (C)
-0.7
N.D.
N.D.
-0.5
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
N.D.
N.D.
-0.6
-0.5
carbon source
propionate (C)
+0.1
N.D.
N.D.
-1.1
+0.4
carbon source
Octanoic (C)
-0.7
N.D.
N.D.
-0.1
+0.4
carbon source
propionate (C)
-0.1
N.D.
N.D.
-0.7
+0.6
carbon source
pyruvate (C)
+0.0
N.D.
N.D.
-0.7
+0.5
stress
R2A with Vancomycin 0.5 mg/ml
-1.0
N.D.
N.D.
-0.1
+1.0
stress
R2A with nitrate 150 mM
-0.6
N.D.
N.D.
+0.1
+0.7
carbon source
Suberic (C)
-0.3
N.D.
N.D.
-0.4
+0.9
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
N.D.
N.D.
-0.6
+0.7
stress
R2A with Zinc 0.1 mM
-0.3
N.D.
N.D.
-0.1
+0.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.7
N.D.
N.D.
-0.8
+0.5
stress
R2A with copper (II) chloride 0.25 mM
-1.2
N.D.
N.D.
+0.2
+1.4
carbon source
Protocatechuic Acid (C)
+0.7
N.D.
N.D.
-0.4
+0.2
carbon source
L-Malic (C)
-0.1
N.D.
N.D.
-0.1
+0.9
stress
R2A with Lomefloxacin 0.001 mM
-0.5
N.D.
N.D.
+0.1
+1.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.4
N.D.
N.D.
-0.1
+0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
N.D.
N.D.
-0.2
+1.4
lb
LB
+0.2
N.D.
N.D.
-0.0
+0.9
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
N.D.
N.D.
+0.1
+1.3
stress
R2A with Lomefloxacin 0.00075 mM
+0.3
N.D.
N.D.
+0.4
+1.5
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