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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS00975 and RR42_RS00980 are separated by 72 nucleotides
RR42_RS00980 and RR42_RS00985 are separated by 58 nucleotides
RR42_RS00985 and RR42_RS00990 are separated by 10 nucleotides
RR42_RS00990 and RR42_RS00995 are separated by 158 nucleotides
RR42_RS00975: RR42_RS00975 - MBL fold metallo-hydrolase, at 230,222 to 231,154
_RS00975
RR42_RS00980: RR42_RS00980 - hypothetical protein, at 231,227 to 231,823
_RS00980
RR42_RS00985: RR42_RS00985 - acetyltransferase, at 231,882 to 232,496
_RS00985
RR42_RS00990: RR42_RS00990 - GntR family transcriptional regulator, at 232,507 to 233,244
_RS00990
RR42_RS00995: RR42_RS00995 - sodium:cation symporter, at 233,403 to 234,932
_RS00995
Group
Condition
RR42
_RS00975
RR42
_RS00980
RR42
_RS00985
RR42
_RS00990
RR42
_RS00995
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.6
-0.5
-0.1
-0.6
-0.4
nitrogen source
L-Glutamine (N)
-0.1
-0.5
+0.1
-0.9
+0.0
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.6
-0.2
-0.1
-0.4
-0.1
stress
R2A with sodium fluoride 100 mM
-0.4
-0.4
-0.1
-0.2
-0.1
stress
R2A with Chlorite 4 mM
-0.6
-0.1
-0.2
-0.1
-0.2
stress
R2A with Nickel (II) chloride 0.25 mM
-0.6
-0.5
-0.1
+0.0
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.5
+0.2
-0.7
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
-0.6
-0.2
-0.2
-0.1
stress
R2A with Cephalothin 0.25 mg/ml
-0.5
-0.4
+0.0
+0.2
-0.1
carbon source
Carbon source Phenylacetic 2.5 mM
+0.2
-0.1
+0.1
-0.7
-0.1
carbon source
L-Lactate (C)
+0.4
-0.5
-0.1
-0.2
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.8
+0.1
-0.2
+0.4
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.8
+0.0
-0.2
+0.0
+0.5
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.1
-0.5
-0.3
+0.5
-0.2
carbon source
Azelaic (C)
-0.4
-0.2
+0.3
-0.2
+0.3
carbon source
Octanoic (C)
-0.5
-0.3
+0.0
+0.6
+0.0
carbon source
Suberic (C)
-0.4
+0.3
+0.1
-0.1
+0.3
carbon source
D-Lactate (C)
+0.4
-0.5
+0.0
+0.2
+0.1
carbon source
Dodecandioic (C)
-0.4
+0.2
+0.3
+0.2
+0.2
nitrogen source
L-Lysine (N)
+0.2
-0.4
+0.1
+0.5
+0.0
carbon source
D-Gluconic Acid (C)
+0.6
-0.6
-0.2
+0.6
+0.1
carbon source
L-Leucine (C)
+0.5
-0.3
-0.1
+0.4
+0.1
carbon source
L-Malic (C)
+0.4
-0.2
+0.0
+0.5
-0.0
stress
R2A with Cobalt chloride 0.5 mM
+0.4
+0.2
-0.2
+0.0
+0.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.5
-0.3
-0.2
+0.7
+0.1
nitrogen source
D-Alanine (N)
+0.3
-0.2
+0.1
+0.4
+0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.7
+0.3
+0.2
-0.1
-0.1
carbon source
Heptanoic (C)
+0.4
+0.2
+0.2
+0.3
+0.1
carbon source
succinate (C)
+0.4
+0.2
+0.2
+0.3
+0.1
lb
LB
+0.7
+0.5
+0.1
-0.2
+0.3
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