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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS00950 and RR42_RS00955 are separated by 118 nucleotides
RR42_RS00955 and RR42_RS00960 are separated by 79 nucleotides
RR42_RS00960 and RR42_RS00965 are separated by 60 nucleotides
RR42_RS00965 and RR42_RS00970 are separated by 12 nucleotides
RR42_RS00950: RR42_RS00950 - glyoxylate reductase, at 226,613 to 227,554
_RS00950
RR42_RS00955: RR42_RS00955 - hydroxymethylglutaryl-CoA lyase, at 227,673 to 228,608
_RS00955
RR42_RS00960: RR42_RS00960 - prolyl-tRNA synthetase, at 228,688 to 229,167
_RS00960
RR42_RS00965: RR42_RS00965 - Fe-S oxidoreductase, at 229,228 to 229,497
_RS00965
RR42_RS00970: RR42_RS00970 - DSBA oxidoreductase, at 229,510 to 230,199
_RS00970
Group
Condition
RR42
_RS00950
RR42
_RS00955
RR42
_RS00960
RR42
_RS00965
RR42
_RS00970
nitrogen source
L-Valine (N)
-1.1
-5.3
+0.1
N.D.
+0.0
nitrogen source
L-Valine (N)
-0.9
-5.4
-0.1
N.D.
+0.1
nitrogen source
L-Leucine (N)
-1.2
-5.1
+0.1
N.D.
+0.2
nitrogen source
L-Leucine (N)
-0.6
-5.1
+0.2
N.D.
+0.3
carbon source
L-Leucine (C)
-0.4
-4.3
-0.3
N.D.
+0.1
carbon source
L-Leucine (C)
-0.6
-5.1
+0.9
N.D.
+0.3
nitrogen source
L-Isoleucine (N)
-0.6
-1.8
+0.1
N.D.
-0.1
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.1
-1.0
-0.9
N.D.
-0.1
nitrogen source
L-Isoleucine (N)
-0.5
-1.4
-0.1
N.D.
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.6
-0.7
-0.2
N.D.
-0.3
stress
R2A with Lomefloxacin 0.00075 mM
-0.0
-0.9
-0.3
N.D.
-0.5
stress
R2A with Nickel (II) chloride 0.25 mM
-0.3
-0.8
-0.7
N.D.
+0.2
carbon source
D-Fructose (C)
+0.4
-1.2
+0.0
N.D.
+0.1
carbon source
L-Tryptophan (C)
+0.1
-1.2
+0.4
N.D.
+0.4
carbon source
D-Gluconic Acid (C)
+0.2
-1.1
+0.6
N.D.
+0.3
temperature
R2A 23C
-0.3
-0.7
+0.7
N.D.
+0.2
stress
R2A with copper (II) chloride 0.25 mM
+0.6
-0.9
+0.2
N.D.
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
+1.1
-1.1
N.D.
+0.4
lb
LB
+0.1
+1.6
-0.9
N.D.
-0.1
carbon source
Protocatechuic Acid (C)
+0.1
+1.5
-0.5
N.D.
-0.1
carbon source
Protocatechuic Acid (C)
+0.1
+1.3
+0.1
N.D.
+0.3
carbon source
Pimelic (C)
+0.5
+1.0
+0.3
N.D.
+0.3
carbon source
Pimelic (C)
+0.4
+1.2
+0.3
N.D.
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.6
+2.5
+0.1
N.D.
-0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.7
+2.4
-0.0
N.D.
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.7
+2.7
-0.4
N.D.
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.8
+3.1
+0.3
N.D.
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.5
+3.3
-0.5
N.D.
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+1.0
+2.6
+1.3
N.D.
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.5
+3.5
-0.2
N.D.
+0.1
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