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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS00940 and RR42_RS00950 are separated by 1294 nucleotides
RR42_RS00950 and RR42_RS00955 are separated by 118 nucleotides
RR42_RS00955 and RR42_RS00960 are separated by 79 nucleotides
RR42_RS00960 and RR42_RS00965 are separated by 60 nucleotides
RR42_RS00940: RR42_RS00940 - biotin synthase, at 224,272 to 225,318
_RS00940
RR42_RS00950: RR42_RS00950 - glyoxylate reductase, at 226,613 to 227,554
_RS00950
RR42_RS00955: RR42_RS00955 - hydroxymethylglutaryl-CoA lyase, at 227,673 to 228,608
_RS00955
RR42_RS00960: RR42_RS00960 - prolyl-tRNA synthetase, at 228,688 to 229,167
_RS00960
RR42_RS00965: RR42_RS00965 - Fe-S oxidoreductase, at 229,228 to 229,497
_RS00965
Group
Condition
RR42
_RS00940
RR42
_RS00950
RR42
_RS00955
RR42
_RS00960
RR42
_RS00965
nitrogen source
L-Leucine (N)
-2.7
-1.2
-5.1
+0.1
N.D.
nitrogen source
L-Leucine (N)
-3.0
-0.6
-5.1
+0.2
N.D.
nitrogen source
L-Valine (N)
-1.7
-1.1
-5.3
+0.1
N.D.
nitrogen source
L-Valine (N)
-1.1
-0.9
-5.4
-0.1
N.D.
carbon source
L-Leucine (C)
-2.6
-0.6
-5.1
+0.9
N.D.
carbon source
L-Leucine (C)
-2.3
-0.4
-4.3
-0.3
N.D.
carbon source
Dodecandioic (C)
-4.4
-0.1
+0.4
-0.3
N.D.
carbon source
Octanoic (C)
-5.3
+0.3
+0.4
+0.1
N.D.
nitrogen source
L-Isoleucine (N)
-1.7
-0.6
-1.8
+0.1
N.D.
carbon source
Heptanoic (C)
-3.7
+0.4
-0.1
-0.4
N.D.
carbon source
Octanoic (C)
-4.6
+0.1
+0.7
+0.3
N.D.
nitrogen source
L-Isoleucine (N)
-1.6
-0.5
-1.4
-0.1
N.D.
carbon source
Hexanoic (C)
-3.4
+0.2
+0.1
-0.3
N.D.
carbon source
Dodecandioic (C)
-4.3
+0.3
+0.6
+0.1
N.D.
carbon source
Heptanoic (C)
-3.3
+0.3
-0.3
+0.1
N.D.
nitrogen source
Glycine (N)
-2.6
-0.1
-0.3
-0.0
N.D.
nitrogen source
L-Glutamine (N)
-1.9
-0.5
-0.3
-0.3
N.D.
carbon source
Valeric (C)
-2.7
+0.2
+0.1
-0.1
N.D.
carbon source
Azelaic (C)
-2.8
-0.2
+0.3
+0.3
N.D.
carbon source
propionate (C)
-2.4
+0.3
+0.2
-0.4
N.D.
nitrogen source
L-Asparagine (N)
-2.4
+0.3
+0.2
-0.0
N.D.
carbon source
Hexanoic (C)
-2.5
+0.0
+0.3
+0.4
N.D.
carbon source
Azelaic (C)
-2.2
+0.2
+0.3
+0.7
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.7
+2.7
-0.4
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
+0.7
+2.4
-0.0
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
+0.6
+2.5
+0.1
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.8
+3.1
+0.3
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+1.5
+3.3
-0.5
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+1.5
+3.5
-0.2
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
+1.0
+2.6
+1.3
N.D.
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