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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS00860 and RR42_RS00865 are separated by 85 nucleotides
RR42_RS00865 and RR42_RS00870 are separated by 72 nucleotides
RR42_RS00870 and RR42_RS00875 are separated by 161 nucleotides
RR42_RS00875 and RR42_RS00880 overlap by 4 nucleotides
RR42_RS00860: RR42_RS00860 - MerR family transcriptional regulator, at 208,798 to 209,232
_RS00860
RR42_RS00865: RR42_RS00865 - phenylacetic acid degradation protein PaaI, at 209,318 to 209,776
_RS00865
RR42_RS00870: RR42_RS00870 - isovaleryl-CoA dehydrogenase, at 209,849 to 211,039
_RS00870
RR42_RS00875: RR42_RS00875 - isocitrate dehydrogenase, at 211,201 to 213,045
_RS00875
RR42_RS00880: RR42_RS00880 - carbonate dehydratase, at 213,042 to 213,713
_RS00880
Group
Condition
RR42
_RS00860
RR42
_RS00865
RR42
_RS00870
RR42
_RS00875
RR42
_RS00880
carbon source
Pimelic (C)
-0.7
-0.1
N.D.
-5.1
N.D.
carbon source
Pimelic (C)
-0.6
-0.1
N.D.
-5.1
N.D.
carbon source
Ethanol (C)
-0.7
-0.0
N.D.
-4.6
N.D.
carbon source
Octanoic (C)
+0.0
-0.1
N.D.
-4.7
N.D.
carbon source
Octanoic (C)
+0.0
+0.2
N.D.
-4.9
N.D.
carbon source
Ethanol (C)
-0.5
+0.2
N.D.
-4.3
N.D.
carbon source
Azelaic (C)
-0.0
-0.1
N.D.
-4.3
N.D.
carbon source
Azelaic (C)
-0.0
-0.2
N.D.
-4.1
N.D.
carbon source
Disodium Glutarate (C)
-0.9
-0.1
N.D.
-3.2
N.D.
carbon source
L-Leucine (C)
-0.7
+0.0
N.D.
-3.5
N.D.
carbon source
L-Proline (C)
-1.4
-0.2
N.D.
-2.4
N.D.
carbon source
L-Leucine (C)
-0.4
-0.1
N.D.
-3.2
N.D.
carbon source
Disodium Glutarate (C)
-0.2
-0.1
N.D.
-3.1
N.D.
carbon source
butyrate (C)
-0.3
+0.1
N.D.
-2.9
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.0
-0.1
N.D.
-1.3
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-1.9
+0.0
N.D.
-0.3
N.D.
carbon source
L-Tryptophan (C)
-0.9
-0.1
N.D.
-0.8
N.D.
carbon source
a-Ketoglutaric (C)
-0.1
-0.0
N.D.
-1.5
N.D.
carbon source
Suberic (C)
-0.9
-0.0
N.D.
-0.7
N.D.
carbon source
a-Ketoglutaric (C)
-0.2
+0.0
N.D.
-1.4
N.D.
nitrogen source
L-Leucine (N)
-0.2
-0.1
N.D.
-1.2
N.D.
carbon source
L-Tryptophan (C)
-0.6
+0.0
N.D.
-0.8
N.D.
carbon source
Protocatechuic Acid (C)
-0.9
+0.2
N.D.
-0.5
N.D.
carbon source
Heptanoic (C)
-1.0
+0.1
N.D.
-0.3
N.D.
carbon source
Dodecandioic (C)
+0.2
-0.1
N.D.
-1.1
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.5
+0.0
N.D.
-1.4
N.D.
carbon source
Dodecandioic (C)
+0.6
-0.1
N.D.
-1.2
N.D.
nitrogen source
L-Glutamine (N)
-1.1
-0.1
N.D.
+0.5
N.D.
carbon source
Suberic (C)
+0.3
+0.1
N.D.
-1.1
N.D.
carbon source
propionate (C)
+1.2
-0.0
N.D.
-0.1
N.D.
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