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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS00820 and RR42_RS00825 are separated by 260 nucleotides
RR42_RS00825 and RR42_RS00830 are separated by 128 nucleotides
RR42_RS00830 and RR42_RS00835 are separated by 91 nucleotides
RR42_RS00835 and RR42_RS00840 are separated by 168 nucleotides
RR42_RS00820: RR42_RS00820 - hypothetical protein, at 200,910 to 201,233
_RS00820
RR42_RS00825: RR42_RS00825 - arginyl-tRNA synthetase, at 201,494 to 203,287
_RS00825
RR42_RS00830: RR42_RS00830 - cell division protein FtsN, at 203,416 to 204,192
_RS00830
RR42_RS00835: RR42_RS00835 - DSBA oxidoreductase, at 204,284 to 204,922
_RS00835
RR42_RS00840: RR42_RS00840 - short-chain dehydrogenase, at 205,091 to 205,903
_RS00840
Group
Condition
RR42
_RS00820
RR42
_RS00825
RR42
_RS00830
RR42
_RS00835
RR42
_RS00840
nitrogen source
D-Alanine (N)
-0.3
N.D.
-4.7
-0.1
-0.1
nitrogen source
D-Alanine (N)
-0.0
N.D.
-4.8
-0.3
+0.0
nitrogen source
Glycine (N)
+0.1
N.D.
-5.1
-0.4
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
+0.6
N.D.
-3.7
-0.9
-0.8
stress
R2A with copper (II) chloride 0.25 mM
+0.1
N.D.
-3.2
-0.1
-0.1
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.1
N.D.
-3.5
+0.6
-0.0
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.2
N.D.
-2.6
-0.2
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
N.D.
-1.7
-0.7
-0.5
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
N.D.
-1.7
-0.6
-0.3
carbon source
adipate (C)
+0.2
N.D.
-2.3
-0.3
+0.1
carbon source
Pimelic (C)
-0.1
N.D.
-1.6
-0.1
-0.5
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.3
N.D.
-2.2
-0.0
+0.3
stress
R2A with Cobalt chloride 0.5 mM
-0.3
N.D.
-1.9
-0.1
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
N.D.
-1.7
+0.0
-0.3
stress
R2A with nitrate 200 mM
-0.4
N.D.
-1.8
-0.2
+0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
N.D.
-1.8
+0.1
+0.1
carbon source
Azelaic (C)
-0.2
N.D.
-1.7
-0.2
+0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.2
N.D.
-2.0
+0.3
-0.3
carbon source
adipate (C)
+0.3
N.D.
-1.7
-0.2
-0.0
carbon source
Azelaic (C)
+0.1
N.D.
-1.9
+0.2
+0.2
carbon source
Suberic (C)
-0.3
N.D.
-1.5
+0.0
+0.4
carbon source
Protocatechuic Acid (C)
+0.4
N.D.
-0.7
-0.7
-0.3
carbon source
Suberic (C)
+0.1
N.D.
-1.8
+0.2
+0.3
stress
R2A with sodium fluoride 100 mM
+0.3
N.D.
-2.0
-0.1
+0.6
stress
R2A with Nickel (II) chloride 0.25 mM
+0.2
N.D.
-1.7
+0.4
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.5
N.D.
-1.5
+0.2
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
N.D.
-1.2
+0.6
+0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.5
N.D.
-1.1
-0.3
+0.8
stress
R2A with Nickel (II) chloride 0.5 mM
+0.5
N.D.
-0.8
+0.2
+0.7
lb
LB
-0.6
N.D.
-0.5
+1.2
+0.6
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