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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS00730 and RR42_RS00735 are separated by 265 nucleotides
RR42_RS00735 and RR42_RS00740 are separated by 66 nucleotides
RR42_RS00740 and RR42_RS00745 are separated by 340 nucleotides
RR42_RS00745 and RR42_RS00750 are separated by 58 nucleotides
RR42_RS00730: RR42_RS00730 - enoyl-CoA hydratase, at 184,116 to 184,934
_RS00730
RR42_RS00735: RR42_RS00735 - fumarylacetoacetate hydrolase, at 185,200 to 186,183
_RS00735
RR42_RS00740: RR42_RS00740 - ABC transporter substrate-binding protein, at 186,250 to 187,206
_RS00740
RR42_RS00745: RR42_RS00745 - IclR family transcriptional regulator, at 187,547 to 188,383
_RS00745
RR42_RS00750: RR42_RS00750 - hypothetical protein, at 188,442 to 189,422
_RS00750
Group
Condition
RR42
_RS00730
RR42
_RS00735
RR42
_RS00740
RR42
_RS00745
RR42
_RS00750
nitrogen source
casaminos (N)
-0.4
-0.5
-0.4
-0.6
-0.8
temperature
R2A 23C
-0.4
-0.3
-0.4
-0.6
-0.5
nitrogen source
L-Serine (N)
-0.3
-0.3
-0.3
-0.7
-0.4
nitrogen source
L-Glutamine (N)
-0.2
-0.2
-0.2
-0.6
-0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
-0.3
-0.8
-0.7
-0.2
r2a
R2A
-0.3
-0.4
-0.1
-0.7
-0.4
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.4
-0.3
-0.2
-0.5
-0.4
stress
R2A with Lomefloxacin 0.00075 mM
-0.2
-0.5
+0.1
-0.6
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.1
-0.1
-0.8
-0.4
nitrogen source
Glucuronamide (N)
-0.2
-0.5
+0.1
-0.4
-0.3
temperature
R2A 23C
-0.3
-0.2
-0.2
-0.5
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
-0.3
-0.0
-1.0
+0.3
carbon source
Protocatechuic Acid (C)
+0.0
+0.0
-0.1
-0.9
-0.3
stress
R2A with nitrate 200 mM
-0.3
-0.1
+0.1
-0.6
-0.2
carbon source
Protocatechuic Acid (C)
-0.3
-0.1
+0.2
-0.6
-0.3
stress
R2A with Cobalt chloride 0.5 mM
-0.4
+0.1
+0.1
-0.6
-0.2
carbon source
Pimelic (C)
-0.2
+0.2
+0.2
-1.0
-0.0
stress
R2A with A22 0.01 mg/ml
-0.2
-0.0
+0.3
-0.4
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
-0.2
-0.7
-0.4
+0.2
carbon source
Pimelic (C)
-0.1
+0.1
+0.4
-1.3
+0.3
carbon source
adipate (C)
-0.0
+0.3
+0.1
-1.5
+0.7
carbon source
Carbon source Phenylacetic 2.5 mM
+0.2
-0.2
-0.1
-0.5
+0.3
carbon source
Azelaic (C)
+0.1
+0.1
+0.3
-0.8
+0.0
carbon source
adipate (C)
-0.2
+0.3
+0.4
-1.3
+0.6
carbon source
Disodium Glutarate (C)
-0.0
+0.2
+0.7
-1.1
+0.4
lb
LB
+0.3
-0.3
+0.9
-0.7
+0.3
stress
R2A with Chlorite 4 mM
+0.2
+0.2
+0.3
+0.4
-0.2
stress
R2A with Nickel (II) chloride 0.5 mM
+0.4
+0.3
+0.1
+0.2
+0.5
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.2
+0.3
+0.5
+0.3
+0.2
stress
R2A with Nickel (II) chloride 0.25 mM
+0.3
+0.5
+0.2
+0.5
+0.4
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