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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS00700 and RR42_RS00705 are separated by 57 nucleotides
RR42_RS00705 and RR42_RS00710 are separated by 28 nucleotides
RR42_RS00710 and RR42_RS00715 are separated by 896 nucleotides
RR42_RS00715 and RR42_RS00720 are separated by 219 nucleotides
RR42_RS00700: RR42_RS00700 - pantothenate kinase, at 177,702 to 178,544
_RS00700
RR42_RS00705: RR42_RS00705 - hypothetical protein, at 178,602 to 179,330
_RS00705
RR42_RS00710: RR42_RS00710 - ADP-heptose synthase, at 179,359 to 179,847
_RS00710
RR42_RS00715: RR42_RS00715 - ferritin, at 180,744 to 181,607
_RS00715
RR42_RS00720: RR42_RS00720 - patatin, at 181,827 to 183,068
_RS00720
Group
Condition
RR42
_RS00700
RR42
_RS00705
RR42
_RS00710
RR42
_RS00715
RR42
_RS00720
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
-0.0
N.D.
-5.2
+0.1
lb
LB
N.D.
+0.3
N.D.
-3.7
-1.3
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
-0.5
N.D.
-3.9
-0.2
stress
R2A with nitrate 150 mM
N.D.
+0.4
N.D.
-4.8
+0.1
r2a
R2A
N.D.
-0.2
N.D.
-3.2
-0.6
temperature
R2A 23C
N.D.
-0.1
N.D.
-3.2
-0.7
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
+0.1
N.D.
-4.0
+0.2
stress
R2A with Cobalt chloride 0.3 mM
N.D.
+0.1
N.D.
-3.9
+0.3
stress
R2A with Nickel (II) chloride 0.5 mM
N.D.
+0.1
N.D.
-3.8
+0.3
temperature
R2A 37C
N.D.
+0.2
N.D.
-3.4
-0.2
carbon source
Carbon source D,L-Lactate 10 mM
N.D.
-0.1
N.D.
-3.0
-0.2
stress
R2A with Dimethyl Sulfoxide 5 vol%
N.D.
-0.1
N.D.
-3.1
-0.1
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
+0.1
N.D.
-3.1
-0.3
r2a
R2A
N.D.
+0.0
N.D.
-3.1
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
+0.2
N.D.
-3.8
+0.4
stress
R2A with Bacitracin 0.5 mg/ml
N.D.
+0.3
N.D.
-3.3
-0.0
stress
R2A with Cobalt chloride 0.5 mM
N.D.
-0.1
N.D.
-2.9
+0.1
r2a
R2A
N.D.
+0.4
N.D.
-3.8
+0.5
stress
R2A with nitrate 200 mM
N.D.
-0.0
N.D.
-3.2
+0.3
carbon source
Valeric (C)
N.D.
-0.4
N.D.
-2.6
+0.2
carbon source
propionate (C)
N.D.
-0.2
N.D.
-2.7
+0.2
stress
R2A with Chlorite 4 mM
N.D.
-0.1
N.D.
-2.8
+0.2
carbon source
Valeric (C)
N.D.
+0.2
N.D.
-2.7
-0.2
carbon source
Suberic (C)
N.D.
+0.3
N.D.
-2.6
-0.3
carbon source
Disodium Glutarate (C)
N.D.
-0.0
N.D.
-2.8
+0.3
carbon source
D,L-Lactate (C)
N.D.
+0.3
N.D.
-2.8
+0.1
stress
R2A with Chloride 300 mM
N.D.
-0.2
N.D.
-2.5
+0.4
carbon source
Octanoic (C)
N.D.
+0.1
N.D.
-2.8
+0.3
carbon source
Octanoic (C)
N.D.
+0.1
N.D.
-2.7
+0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
N.D.
-0.1
N.D.
+2.9
-0.1
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