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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS00605 and RR42_RS00610 are separated by 169 nucleotides
RR42_RS00610 and RR42_RS00615 are separated by 35 nucleotides
RR42_RS00615 and RR42_RS00620 overlap by 4 nucleotides
RR42_RS00620 and RR42_RS00625 are separated by 230 nucleotides
RR42_RS00605: RR42_RS00605 - glutamyl-tRNA amidotransferase, at 158,952 to 160,412
_RS00605
RR42_RS00610: RR42_RS00610 - hypothetical protein, at 160,582 to 161,250
_RS00610
RR42_RS00615: RR42_RS00615 - recombinase XerC, at 161,286 to 162,410
_RS00615
RR42_RS00620: RR42_RS00620 - XRE family transcriptional regulator, at 162,407 to 163,366
_RS00620
RR42_RS00625: RR42_RS00625 - hypothetical protein, at 163,597 to 163,956
_RS00625
Group
Condition
RR42
_RS00605
RR42
_RS00610
RR42
_RS00615
RR42
_RS00620
RR42
_RS00625
nitrogen source
L-Lysine (N)
N.D.
-0.4
-0.3
-1.8
-2.9
carbon source
Protocatechuic Acid (C)
N.D.
-0.2
-0.6
+0.2
-2.6
stress
R2A with nitrate 200 mM
N.D.
-0.3
-0.2
-0.2
-2.2
nitrogen source
L-Tryptophan (N)
N.D.
-1.0
-0.9
-0.6
-0.1
carbon source
Carbon source D,L-Lactate 10 mM
N.D.
-0.3
-0.5
+0.1
-1.6
stress
R2A with Dimethyl Sulfoxide 5 vol%
N.D.
-0.9
-0.8
-0.2
-0.4
nitrogen source
L-Tryptophan (N)
N.D.
-0.7
-0.4
-0.3
-0.8
carbon source
a-Ketoglutaric (C)
N.D.
-0.6
-0.6
-0.4
-0.7
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
-0.7
-1.0
+0.2
-0.7
carbon source
L-Tryptophan (C)
N.D.
-0.4
-0.7
-0.8
-0.3
nitrogen source
D-Alanine (N)
N.D.
-0.9
-0.7
-0.1
-0.4
carbon source
L-Histidine (C)
N.D.
-0.7
-1.2
-0.2
-0.0
carbon source
Pimelic (C)
N.D.
-1.4
-0.1
+0.2
-0.8
stress
R2A with D-Cycloserine 0.5 mg/ml
N.D.
-0.4
+0.0
-0.3
-1.4
nitrogen source
casaminos (N)
N.D.
-0.5
-0.7
-0.3
-0.6
nitrogen source
L-Valine (N)
N.D.
-0.9
-0.5
+0.3
-1.0
stress
R2A with sodium fluoride 100 mM
N.D.
-0.9
-1.2
+0.1
+0.1
carbon source
a-Ketoglutaric (C)
N.D.
-0.8
-0.6
+0.2
-0.5
carbon source
L-Glutamine (C)
N.D.
-0.4
-0.7
+0.2
-0.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-0.3
-0.7
+0.5
-0.6
carbon source
adipate (C)
N.D.
-1.1
-0.3
-0.1
+0.6
nitrogen source
Glucuronamide (N)
N.D.
-1.1
-0.7
+0.1
+0.8
lb
LB
N.D.
-0.7
-1.3
+0.1
+1.0
stress
R2A with Cobalt chloride 0.3 mM
N.D.
+0.2
-0.0
+0.4
-1.4
nitrogen source
D-Alanine (N)
N.D.
-0.8
-0.5
-0.3
+0.9
nitrogen source
L-Serine (N)
N.D.
-0.9
-0.4
-0.2
+1.0
nitrogen source
L-Leucine (N)
N.D.
-0.7
-0.8
+0.3
+0.7
carbon source
adipate (C)
N.D.
-1.3
+0.5
+0.1
+0.3
carbon source
L-Lactate (C)
N.D.
-0.8
-0.4
-0.0
+0.9
carbon source
D,L-Lactate (C)
N.D.
-0.8
-0.2
-0.0
+1.1
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