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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS00490 and RR42_RS00495 are separated by 332 nucleotides
RR42_RS00495 and RR42_RS00500 are separated by 1 nucleotides
RR42_RS00500 and RR42_RS00505 are separated by 227 nucleotides
RR42_RS00505 and RR42_RS00510 overlap by 34 nucleotides
RR42_RS00490: RR42_RS00490 - potassium-transporting ATPase subunit C, at 127,182 to 127,799
_RS00490
RR42_RS00495: RR42_RS00495 - histidine kinase, at 128,132 to 131,065
_RS00495
RR42_RS00500: RR42_RS00500 - transcriptional regulator, at 131,067 to 131,762
_RS00500
RR42_RS00505: RR42_RS00505 - histidine kinase, at 131,990 to 134,026
_RS00505
RR42_RS00510: RR42_RS00510 - transcriptional regulator, at 133,993 to 134,652
_RS00510
Group
Condition
RR42
_RS00490
RR42
_RS00495
RR42
_RS00500
RR42
_RS00505
RR42
_RS00510
temperature
R2A 23C
-0.7
-0.4
+0.0
-0.4
-0.7
carbon source
Octanoic (C)
-2.0
+0.3
-0.2
-0.1
-0.2
temperature
R2A 23C
-0.4
-0.3
-0.1
-0.2
-1.2
carbon source
D,L-Lactate (C)
-0.8
-0.1
-0.0
-0.1
-0.9
nitrogen source
L-Glutamine (N)
-0.5
-0.3
-0.4
-0.1
-0.4
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.6
-0.3
-0.3
-0.2
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
-1.0
-0.2
+0.4
-0.3
-0.5
nitrogen source
casaminos (N)
-0.8
-0.4
-0.1
-0.4
+0.1
r2a
R2A
+0.1
-0.1
-0.2
-0.4
-0.9
nitrogen source
L-Tryptophan (N)
-0.4
-0.2
+0.1
-0.2
-0.6
carbon source
Protocatechuic Acid (C)
-1.3
-0.3
+0.2
+0.3
-0.2
carbon source
Pimelic (C)
-0.8
-0.2
-0.3
-0.1
+0.1
nitrogen source
L-Lysine (N)
-1.1
+0.0
+0.2
-0.0
-0.2
carbon source
Octanoic (C)
-0.3
+0.4
-0.1
-0.0
-0.7
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.1
+0.2
+0.1
+0.2
-1.0
stress
R2A with Vancomycin 0.5 mg/ml
+0.5
-0.3
-0.2
-0.3
-0.2
lb
LB
+1.2
-0.1
-0.4
+0.1
-1.1
carbon source
Carbon source D,L-Lactate 10 mM
-0.4
+0.2
-0.2
-0.2
+0.5
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.4
+0.2
+0.2
+0.3
-0.4
carbon source
D-Lactate (C)
+0.8
-0.2
+0.2
+0.0
-0.4
r2a
R2A
+0.2
+0.2
+0.5
+0.1
-0.5
stress
R2A with Chlorite 4 mM
-0.7
+0.0
+0.3
+0.2
+0.8
stress
R2A with Cobalt chloride 0.5 mM
+0.7
-0.1
-0.3
+0.0
+0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.7
+0.1
-0.1
-0.2
+0.5
stress
R2A with D-Cycloserine 0.5 mg/ml
+1.2
+0.2
+0.2
-0.1
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.2
+0.5
-0.3
+0.9
carbon source
Trisodium citrate (C)
+0.9
+0.3
+0.4
+0.1
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
+0.5
+0.2
+0.2
+0.5
stress
R2A with nitrate 150 mM
+0.2
+0.7
+0.4
-0.0
+0.5
stress
R2A with Cobalt chloride 0.3 mM
+0.2
+0.1
+0.5
+0.2
+1.1
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