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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS00485 and RR42_RS00490 are separated by 57 nucleotides
RR42_RS00490 and RR42_RS00495 are separated by 332 nucleotides
RR42_RS00495 and RR42_RS00500 are separated by 1 nucleotides
RR42_RS00500 and RR42_RS00505 are separated by 227 nucleotides
RR42_RS00485: RR42_RS00485 - potassium-transporting ATPase subunit B, at 124,899 to 127,124
_RS00485
RR42_RS00490: RR42_RS00490 - potassium-transporting ATPase subunit C, at 127,182 to 127,799
_RS00490
RR42_RS00495: RR42_RS00495 - histidine kinase, at 128,132 to 131,065
_RS00495
RR42_RS00500: RR42_RS00500 - transcriptional regulator, at 131,067 to 131,762
_RS00500
RR42_RS00505: RR42_RS00505 - histidine kinase, at 131,990 to 134,026
_RS00505
Group
Condition
RR42
_RS00485
RR42
_RS00490
RR42
_RS00495
RR42
_RS00500
RR42
_RS00505
nitrogen source
casaminos (N)
-0.8
-0.8
-0.4
-0.1
-0.4
carbon source
Octanoic (C)
-0.1
-2.0
+0.3
-0.2
-0.1
temperature
R2A 23C
-0.4
-0.7
-0.4
+0.0
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
-0.5
-1.0
-0.2
+0.4
-0.3
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.3
-0.6
-0.3
-0.3
-0.2
nitrogen source
L-Glutamine (N)
-0.2
-0.5
-0.3
-0.4
-0.1
nitrogen source
L-Serine (N)
-0.3
-0.2
-0.3
-0.5
-0.2
nitrogen source
Glucuronamide (N)
-0.5
-0.6
-0.0
-0.2
-0.2
temperature
R2A 23C
-0.5
-0.4
-0.3
-0.1
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.8
-0.2
-0.2
+0.0
-0.1
carbon source
Pimelic (C)
+0.2
-0.8
-0.2
-0.3
-0.1
nitrogen source
L-Lysine (N)
-0.2
-1.1
+0.0
+0.2
-0.0
carbon source
Carbon source D,L-Lactate 10 mM
-0.3
-0.4
+0.2
-0.2
-0.2
carbon source
Protocatechuic Acid (C)
+0.3
-1.3
-0.3
+0.2
+0.3
nitrogen source
nitrate (N)
-0.5
-0.7
+0.3
+0.2
+0.0
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
+0.5
-0.3
-0.2
-0.3
stress
R2A with Chlorite 4 mM
-0.0
-0.7
+0.0
+0.3
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.6
+0.7
+0.1
-0.1
-0.2
carbon source
Azelaic (C)
+0.2
-0.3
+0.3
-0.4
+0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.3
+0.7
-0.1
-0.3
+0.0
carbon source
Heptanoic (C)
+0.2
-0.3
+0.3
-0.3
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.2
-0.4
+0.2
+0.2
+0.3
carbon source
L-Proline (C)
-0.2
+0.3
+0.7
-0.0
-0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
+0.6
+0.1
+0.4
-0.2
lb
LB
+0.0
+1.2
-0.1
-0.4
+0.1
carbon source
D-Lactate (C)
+0.2
+0.8
-0.2
+0.2
+0.0
stress
R2A with nitrate 150 mM
-0.1
+0.2
+0.7
+0.4
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
+0.3
+0.5
+0.2
+0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.1
+1.2
+0.2
+0.2
-0.1
carbon source
Trisodium citrate (C)
+0.1
+0.9
+0.3
+0.4
+0.1
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