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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS00405 and RR42_RS00410 are separated by 121 nucleotides
RR42_RS00410 and RR42_RS00415 are separated by 339 nucleotides
RR42_RS00415 and RR42_RS00420 are separated by 128 nucleotides
RR42_RS00420 and RR42_RS00425 are separated by 126 nucleotides
RR42_RS00405: RR42_RS00405 - glutamate carboxypeptidase, at 108,369 to 109,688
_RS00405
RR42_RS00410: RR42_RS00410 - transcriptional regulator, at 109,810 to 110,286
_RS00410
RR42_RS00415: RR42_RS00415 - ABC transporter permease, at 110,626 to 111,465
_RS00415
RR42_RS00420: RR42_RS00420 - hypothetical protein, at 111,594 to 111,884
_RS00420
RR42_RS00425: RR42_RS00425 - ABC transporter substrate-binding protein, at 112,011 to 113,024
_RS00425
Group
Condition
RR42
_RS00405
RR42
_RS00410
RR42
_RS00415
RR42
_RS00420
RR42
_RS00425
carbon source
Hexanoic (C)
+0.0
-0.4
-0.0
-4.9
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
-4.5
+0.2
-0.7
+0.0
carbon source
Octanoic (C)
+0.1
-1.3
+0.0
-3.5
-0.2
carbon source
Heptanoic (C)
-0.0
-0.7
-0.2
-4.3
+0.5
carbon source
Dodecandioic (C)
+0.1
-0.8
-0.3
-3.0
+0.1
carbon source
Octanoic (C)
-0.1
-0.7
+0.3
-3.7
+0.3
carbon source
Azelaic (C)
-0.3
-0.5
-0.4
-2.5
-0.1
carbon source
Dodecandioic (C)
-0.0
-0.5
-0.7
-2.5
+0.1
carbon source
Azelaic (C)
-0.1
-1.0
-0.0
-2.0
+0.0
carbon source
Valeric (C)
+0.1
-0.5
-0.4
-2.3
-0.1
carbon source
adipate (C)
-0.0
-1.5
+0.3
-1.5
-0.3
nitrogen source
L-Leucine (N)
-0.2
-0.7
-0.1
-2.2
+0.1
nitrogen source
L-Leucine (N)
+0.0
-0.8
-0.0
-2.0
-0.2
carbon source
Valeric (C)
+0.0
-0.5
-0.2
-2.0
-0.2
carbon source
Heptanoic (C)
+0.1
-0.5
+0.1
-2.8
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-2.0
+0.2
-0.3
-0.6
nitrogen source
nitrite (N)
-0.2
-1.8
+0.1
-0.7
-0.1
nitrogen source
L-Glutamine (N)
-0.4
-1.2
-0.1
-1.0
+0.1
carbon source
succinate (C)
-0.1
-0.9
-0.2
-1.1
-0.1
carbon source
Hexanoic (C)
+0.0
-1.2
-0.0
-1.4
+0.1
nitrogen source
casaminos (N)
-0.3
-0.7
-0.2
-1.0
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-3.6
+1.1
-0.1
+0.3
nitrogen source
Glycine (N)
+0.0
-0.3
-0.0
-2.1
+0.4
carbon source
adipate (C)
+0.1
-1.1
+0.4
-1.5
+0.2
carbon source
propionate (C)
+0.2
-0.5
-0.1
-1.6
+0.2
carbon source
Suberic (C)
+0.1
-0.6
+0.3
-1.7
+0.2
nitrogen source
L-Valine (N)
-0.1
+1.0
-0.4
-1.0
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.0
+2.8
-0.2
-1.4
-0.1
lb
LB
+0.8
+1.1
-0.5
-0.7
+0.6
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
+2.7
-0.1
-1.0
+0.1
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