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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS00370 and RR42_RS00375 are separated by 95 nucleotides
RR42_RS00375 and RR42_RS00380 are separated by 163 nucleotides
RR42_RS00380 and RR42_RS00385 overlap by 4 nucleotides
RR42_RS00385 and RR42_RS00390 are separated by 457 nucleotides
RR42_RS00370: RR42_RS00370 - Asp/Glu/hydantoin racemase, at 100,246 to 100,974
_RS00370
RR42_RS00375: RR42_RS00375 - MFS transporter, at 101,070 to 102,368
_RS00375
RR42_RS00380: RR42_RS00380 - GntR family transcriptional regulator, at 102,532 to 103,278
_RS00380
RR42_RS00385: RR42_RS00385 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 103,275 to 104,117
_RS00385
RR42_RS00390: RR42_RS00390 - amidohydrolase, at 104,575 to 105,843
_RS00390
Group
Condition
RR42
_RS00370
RR42
_RS00375
RR42
_RS00380
RR42
_RS00385
RR42
_RS00390
carbon source
Pimelic (C)
+0.8
+0.0
-6.3
+0.6
-0.5
carbon source
Pimelic (C)
+0.3
+0.2
-5.2
+0.3
-0.2
lb
LB
-0.6
-0.4
-1.0
+0.3
-1.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.3
-1.5
-0.0
-0.7
carbon source
a-Ketoglutaric (C)
-0.1
-0.0
-2.3
-0.3
-0.0
carbon source
adipate (C)
+0.8
+0.0
-4.0
+0.8
-0.2
carbon source
Protocatechuic Acid (C)
+0.2
+0.1
-2.0
-1.1
+0.2
nitrogen source
L-Citrulline (N)
-0.7
-0.2
-1.4
+0.1
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
-0.2
-2.7
+0.2
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-0.5
-0.0
-0.8
-0.7
carbon source
Protocatechuic Acid (C)
-0.0
-0.1
-2.1
+0.7
-0.6
carbon source
a-Ketoglutaric (C)
+0.1
-0.1
-2.3
-0.1
+0.3
nitrogen source
L-Lysine (N)
-0.3
-0.2
-1.9
+0.3
+0.2
carbon source
adipate (C)
+0.8
+0.3
-3.6
+0.8
-0.2
carbon source
L-Malic (C)
-0.1
-0.2
-1.8
+0.0
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
-0.4
-1.1
-0.5
+0.2
carbon source
Disodium Glutarate (C)
-0.1
-0.1
-1.5
+0.2
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
-0.4
-0.9
-1.1
+0.6
carbon source
L-Tryptophan (C)
+0.1
+0.1
-1.7
-0.1
+0.3
nitrogen source
D-Alanine (N)
+0.7
+0.1
-1.7
-0.6
+0.2
carbon source
L-Malic (C)
-0.1
-0.1
-1.5
+0.1
+0.4
carbon source
Ethanol (C)
+0.2
+0.2
-1.4
+0.2
-0.4
carbon source
L-Leucine (C)
+0.4
+0.1
-1.0
-0.4
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.4
-1.2
-0.2
+0.3
carbon source
Ethanol (C)
+0.7
+0.0
-1.3
-0.1
-0.0
nitrogen source
L-Glutamine (N)
+1.1
-0.1
-0.1
-1.2
-0.5
carbon source
L-Alanine (C)
+0.4
-0.0
-1.6
+0.2
+0.4
nitrogen source
nitrate (N)
+0.4
-0.1
-0.9
-0.2
+0.5
nitrogen source
nitrite (N)
+0.5
-0.1
-0.8
-0.4
+0.6
carbon source
L-Glutamine (C)
+0.6
+0.2
-1.2
+0.3
+0.1
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