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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS00185 and RR42_RS00190 are separated by 1634 nucleotides
RR42_RS00190 and RR42_RS00195 are separated by 131 nucleotides
RR42_RS00195 and RR42_RS00200 are separated by 58 nucleotides
RR42_RS00200 and RR42_RS00205 overlap by 4 nucleotides
RR42_RS00185: RR42_RS00185 - hypothetical protein, at 61,124 to 61,363
_RS00185
RR42_RS00190: RR42_RS00190 - ABC transporter substrate-binding protein, at 62,998 to 64,179
_RS00190
RR42_RS00195: RR42_RS00195 - ABC transporter permease, at 64,311 to 65,240
_RS00195
RR42_RS00200: RR42_RS00200 - ABC transporter permease, at 65,299 to 66,429
_RS00200
RR42_RS00205: RR42_RS00205 - branched-chain amino acid ABC transporter ATP-binding protein, at 66,426 to 67,211
_RS00205
Group
Condition
RR42
_RS00185
RR42
_RS00190
RR42
_RS00195
RR42
_RS00200
RR42
_RS00205
carbon source
D,L-Lactate (C)
-0.2
-0.0
-0.6
-0.3
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.1
-0.4
-0.6
-0.3
stress
R2A with nitrate 200 mM
-0.1
+0.0
-0.7
-0.2
-0.4
carbon source
Octanoic (C)
+0.0
-0.1
-0.8
-0.3
-0.1
carbon source
Protocatechuic Acid (C)
-0.2
-0.2
+0.0
-0.2
-0.6
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
+0.1
-0.3
-0.2
-0.4
r2a
R2A
-0.6
+0.1
-0.4
-0.1
+0.0
carbon source
Protocatechuic Acid (C)
+0.1
-0.2
+0.1
+0.1
-0.8
nitrogen source
L-Tryptophan (N)
+0.1
-0.1
-0.6
-0.4
+0.3
carbon source
Suberic (C)
+0.1
+0.1
-0.0
-0.2
-0.5
lb
LB
-0.3
-0.1
-0.6
+0.2
+0.2
stress
R2A with sodium fluoride 100 mM
-0.5
+0.1
-0.2
-0.0
+0.1
carbon source
Valeric (C)
-0.2
+0.1
-0.5
+0.0
+0.2
stress
R2A with Bacitracin 0.5 mg/ml
-0.3
-0.0
+0.4
-0.2
+0.1
carbon source
L-Threonine (C)
+0.2
-0.0
-0.4
-0.0
+0.3
carbon source
Pimelic (C)
+0.4
-0.2
+0.2
+0.2
-0.1
temperature
R2A 23C
+0.2
+0.2
-0.2
+0.2
+0.2
nitrogen source
L-Valine (N)
+0.2
-0.2
+0.1
+0.2
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
+0.2
+0.3
+0.2
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
-0.3
+0.2
+0.6
+0.4
-0.2
nitrogen source
L-Leucine (N)
+0.6
-0.3
+0.2
+0.0
+0.3
stress
R2A with Cobalt chloride 0.5 mM
+0.7
-0.3
+0.3
+0.1
-0.2
nitrogen source
L-Threonine (N)
+0.3
-0.1
+0.3
+0.2
+0.1
stress
R2A with Zinc 0.1 mM
+0.6
-0.1
+0.3
-0.2
+0.2
nitrogen source
L-Serine (N)
+0.3
+0.2
+0.2
+0.3
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
+0.1
+0.0
+0.2
+0.2
nitrogen source
L-Asparagine (N)
+0.2
+0.1
+0.5
+0.3
-0.0
stress
R2A with copper (II) chloride 0.25 mM
+0.6
+0.0
+0.3
+0.1
+0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.4
+0.2
+0.1
+0.2
+0.5
stress
R2A with Lomefloxacin 0.001 mM
+0.7
-0.1
+0.4
+0.2
+0.6
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RR42_RS00195
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