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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS23160 and RALBFv3_RS23165 are separated by 84 nucleotides
RALBFv3_RS23165 and RALBFv3_RS23170 are separated by 1614 nucleotides
RALBFv3_RS23170 and RALBFv3_RS23175 are separated by 52 nucleotides
RALBFv3_RS23175 and RALBFv3_RS23180 are separated by 480 nucleotides
RALBFv3_RS23160: RALBFv3_RS23160 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 1,976,424 to 1,976,903
_RS23160
RALBFv3_RS23165: RALBFv3_RS23165 - hypothetical protein, at 1,976,988 to 1,977,761
_RS23165
RALBFv3_RS23170: RALBFv3_RS23170 - chloride channel protein, at 1,979,376 to 1,980,761
_RS23170
RALBFv3_RS23175: RALBFv3_RS23175 - hypothetical protein, at 1,980,814 to 1,981,134
_RS23175
RALBFv3_RS23180: RALBFv3_RS23180 - LysR family transcriptional regulator, at 1,981,615 to 1,982,484
_RS23180
Group
Condition
RALBFv3
_RS23160
RALBFv3
_RS23165
RALBFv3
_RS23170
RALBFv3
_RS23175
RALBFv3
_RS23180
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.2
-0.5
N.D.
-0.2
in planta
Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.7
+0.0
-0.0
N.D.
-0.3
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.2
-0.4
N.D.
-0.2
in planta
tomato xylem local (total stem)
+0.1
-0.2
-0.2
N.D.
-0.6
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.1
-0.2
N.D.
-0.3
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.1
-0.3
-0.0
N.D.
-0.4
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.3
-0.2
+0.1
N.D.
-0.2
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.1
-0.3
-0.1
N.D.
-0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
-0.0
-0.1
N.D.
-0.5
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.3
+0.1
-0.1
N.D.
-0.3
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.5
-0.0
-0.2
N.D.
+0.1
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.1
-0.1
-0.1
N.D.
-0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.3
+0.0
-0.4
N.D.
+0.1
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.4
-0.2
-0.0
N.D.
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.1
-0.0
-0.0
N.D.
-0.5
in planta
tomato xylem local (total stem)
-0.5
-0.2
-0.2
N.D.
+0.5
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.2
-0.1
+0.1
N.D.
-0.4
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.4
-0.1
-0.1
N.D.
+0.4
in planta
tomato xylem local (total stem)
-0.2
-0.1
-0.3
N.D.
+0.4
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
+0.1
+0.2
N.D.
-0.3
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
+0.0
-0.3
N.D.
+0.4
in planta
Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
+0.2
-0.2
N.D.
-0.2
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.1
-0.1
-0.1
N.D.
+0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
-0.0
-0.2
N.D.
+0.4
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.1
+0.0
-0.3
N.D.
+0.6
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.1
+0.0
+0.0
N.D.
+0.6
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
+0.2
-0.2
N.D.
+0.4
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.2
+0.1
+0.0
N.D.
+0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.2
+0.0
-0.1
N.D.
+0.5
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
-0.1
-0.0
N.D.
+0.5
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