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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS22490 and RALBFv3_RS22495 are separated by 101 nucleotides
RALBFv3_RS22495 and RALBFv3_RS22500 are separated by 804 nucleotides
RALBFv3_RS22500 and RALBFv3_RS22505 are separated by 159 nucleotides
RALBFv3_RS22505 and RALBFv3_RS24735 are separated by 13 nucleotides
RALBFv3_RS22490: RALBFv3_RS22490 - acyl-CoA thioesterase, at 1,804,311 to 1,804,805
_RS22490
RALBFv3_RS22495: RALBFv3_RS22495 - disulfide bond formation protein B, at 1,804,907 to 1,805,473
_RS22495
RALBFv3_RS22500: RALBFv3_RS22500 - chorismate mutase, at 1,806,278 to 1,806,865
_RS22500
RALBFv3_RS22505: RALBFv3_RS22505 - prolyl aminopeptidase, at 1,807,025 to 1,807,987
_RS22505
RALBFv3_RS24735: RALBFv3_RS24735 - hypothetical protein, at 1,808,001 to 1,808,394
_RS24735
Group
Condition
RALBFv3
_RS22490
RALBFv3
_RS22495
RALBFv3
_RS22500
RALBFv3
_RS22505
RALBFv3
_RS24735
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.6
-0.5
-0.5
+0.2
+0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.0
+0.2
-1.0
-0.1
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.5
+0.2
-1.1
-0.1
-0.2
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.5
+0.2
-0.3
-0.4
-0.5
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.6
-0.0
-0.8
-0.2
-0.1
m63_quarter_strength
M63_quarter_strength
+0.4
+0.2
-0.7
-0.1
-0.4
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
+0.4
+0.2
-1.0
-0.2
+0.0
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
+0.4
-0.5
-0.1
-0.2
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.5
-0.0
-1.1
-0.0
+0.2
in planta
tomato xylem local (total stem)
+0.5
-0.0
-0.0
-0.4
-0.5
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.3
+0.2
-0.8
-0.1
+0.1
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
+0.7
-0.4
-0.4
+0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
+0.4
-0.5
-0.1
-0.3
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.5
+0.2
-0.7
+0.0
-0.0
stress
SMSA with Ralstonia_antibiotic_mix
+0.1
+0.2
-0.7
+0.0
+0.4
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.2
+0.3
-1.0
-0.1
+0.6
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.5
+0.2
-0.5
-0.1
+0.1
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
+0.4
+0.4
-0.4
-0.2
+0.0
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.7
+0.2
-0.3
-0.2
-0.1
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.5
+0.4
-0.7
-0.0
+0.1
in planta
Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.5
+0.5
+0.7
-0.3
+0.0
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.0
+0.4
+0.5
-0.4
+0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
+0.5
-0.4
+0.0
+0.1
in planta
Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
-0.6
+0.4
+0.9
+0.2
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.4
+0.4
-0.2
-0.2
+0.3
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
+0.6
-0.2
-0.1
+0.3
in planta
tomato xylem local (total stem)
+0.6
+0.8
+0.2
-0.2
-0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
+0.3
+0.4
-0.0
+0.2
in planta
tomato xylem local (total stem)
+0.7
+0.2
+0.8
-0.3
-0.2
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.5
+1.0
+0.4
+0.0
-0.0
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RALBFv3_RS22500
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RALBFv3_RS22505
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RALBFv3_RS24735
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