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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS22420 and RALBFv3_RS22425 are separated by 11 nucleotides
RALBFv3_RS22425 and RALBFv3_RS22430 are separated by 135 nucleotides
RALBFv3_RS22430 and RALBFv3_RS22435 are separated by 210 nucleotides
RALBFv3_RS22435 and RALBFv3_RS22440 are separated by 33 nucleotides
RALBFv3_RS22420: RALBFv3_RS22420 - oxidoreductase, at 1,785,381 to 1,786,334
_RS22420
RALBFv3_RS22425: RALBFv3_RS22425 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 1,786,346 to 1,787,374
_RS22425
RALBFv3_RS22430: RALBFv3_RS22430 - LysR family transcriptional regulator, at 1,787,510 to 1,788,424
_RS22430
RALBFv3_RS22435: RALBFv3_RS22435 - two-component sensor histidine kinase, at 1,788,635 to 1,790,020
_RS22435
RALBFv3_RS22440: RALBFv3_RS22440 - hypothetical protein, at 1,790,054 to 1,790,461
_RS22440
Group
Condition
RALBFv3
_RS22420
RALBFv3
_RS22425
RALBFv3
_RS22430
RALBFv3
_RS22435
RALBFv3
_RS22440
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.3
-0.5
+0.1
+0.1
-1.6
in planta
tomato xylem local (total stem)
-0.2
-0.3
+0.1
+0.8
-2.0
m63_quarter_strength
M63_quarter_strength
-0.2
-0.6
+0.2
-0.0
-0.4
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
-0.6
+0.5
+0.0
-0.9
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.1
-0.4
+0.3
+0.2
-1.2
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.0
-0.6
+0.3
+0.1
-0.7
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.3
+0.1
+0.4
+0.0
-0.8
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.2
+0.1
-0.1
+0.5
-0.8
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
-0.2
-0.3
-0.5
+0.1
+0.5
in planta
Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.4
+0.2
+0.5
+0.3
-0.9
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
-0.1
+0.1
+0.3
+0.1
-0.7
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.2
-0.5
+0.7
+0.5
-1.0
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.0
-0.6
+0.6
+0.2
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.4
-0.0
+0.4
+0.5
-0.6
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
+0.2
+0.9
+0.3
-1.4
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.4
-0.4
+0.7
-0.1
+0.2
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.3
+0.3
-0.1
+0.1
-0.5
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.0
-0.2
+0.7
+0.2
-0.6
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.4
-0.1
+0.6
+0.3
-0.2
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.4
-0.2
+0.9
-0.0
-0.8
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-0.4
+0.6
+0.3
-0.1
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.1
-0.3
-0.1
+0.1
+0.8
in planta
tomato xylem local (total stem)
-0.0
+0.2
+0.5
+0.3
-0.6
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.4
-0.6
+0.7
+0.4
-0.3
in planta
Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
+0.1
+0.5
+0.9
-0.8
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.2
-0.0
-0.4
+0.1
+0.8
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
-0.4
+0.1
+0.6
+0.6
in planta
tomato xylem local (total stem)
+0.5
+0.2
+1.1
+0.3
-1.4
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
+0.0
+0.9
+0.4
+0.8
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
-0.2
+0.3
+0.5
+1.0
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RALBFv3_RS22430
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RALBFv3_RS22440
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