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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS21095 and RALBFv3_RS21100 are separated by 92 nucleotides
RALBFv3_RS21100 and RALBFv3_RS21105 overlap by 4 nucleotides
RALBFv3_RS21105 and RALBFv3_RS21110 overlap by 4 nucleotides
RALBFv3_RS21110 and RALBFv3_RS21115 overlap by 4 nucleotides
RALBFv3_RS21095: RALBFv3_RS21095 - peptidase M1, at 1,444,371 to 1,446,590
_RS21095
RALBFv3_RS21100: RALBFv3_RS21100 - transcriptional regulator, at 1,446,683 to 1,447,006
_RS21100
RALBFv3_RS21105: RALBFv3_RS21105 - CusA/CzcA family heavy metal efflux RND transporter, at 1,447,003 to 1,450,161
_RS21105
RALBFv3_RS21110: RALBFv3_RS21110 - efflux RND transporter periplasmic adaptor subunit, at 1,450,158 to 1,451,378
_RS21110
RALBFv3_RS21115: RALBFv3_RS21115 - TolC family protein, at 1,451,375 to 1,452,733
_RS21115
Group
Condition
RALBFv3
_RS21095
RALBFv3
_RS21100
RALBFv3
_RS21105
RALBFv3
_RS21110
RALBFv3
_RS21115
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.0
N.D.
-0.3
-0.6
+0.4
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.0
N.D.
-0.2
+0.5
-0.3
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.2
N.D.
+0.7
-0.1
-0.5
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.2
N.D.
-0.3
-0.0
+0.4
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.1
N.D.
+0.4
+0.3
-0.5
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.1
N.D.
-0.3
+0.2
+0.3
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
+0.1
N.D.
+0.0
+0.6
-0.3
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.2
N.D.
-0.2
+0.3
+0.2
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.2
N.D.
-0.1
+0.5
+0.2
m63_quarter_strength
M63_quarter_strength
+0.1
N.D.
+0.5
+0.4
-0.1
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.2
N.D.
-0.1
+0.4
+0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
N.D.
-0.0
+0.8
-0.0
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
N.D.
+0.6
+0.2
+0.1
cpg
CPG
+0.3
N.D.
+0.4
+0.0
+0.2
in planta
Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
N.D.
+0.1
+0.7
+0.3
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.0
N.D.
+0.5
+0.5
+0.1
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.2
N.D.
+0.1
+0.4
+0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
N.D.
+0.1
+0.4
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
N.D.
+0.3
+0.6
+0.0
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.0
N.D.
+0.3
+0.8
+0.2
in planta
Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
+0.4
N.D.
+0.2
+0.7
+0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
N.D.
+0.1
+1.0
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.1
N.D.
+0.1
+1.0
+0.2
in planta
tomato xylem local (total stem)
+0.1
N.D.
+0.2
+1.0
+0.2
in planta
tomato xylem local (total stem)
+0.0
N.D.
+0.6
+0.6
+0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.4
N.D.
+0.4
+0.7
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.1
N.D.
+0.2
+1.0
+0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.4
N.D.
+0.4
+0.7
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.6
N.D.
+0.3
+0.5
+0.4
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
N.D.
+0.5
+0.9
+0.4
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