Fitness for 5 genes in Ralstonia solanacearum IBSBF1503

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 100 experiments or choose conditions or try the comparative fitness browser

500 ntRALBFv3_RS20890 and RALBFv3_RS20895 are separated by 59 nucleotidesRALBFv3_RS20895 and RALBFv3_RS20900 are separated by 87 nucleotidesRALBFv3_RS20900 and RALBFv3_RS20905 are separated by 87 nucleotidesRALBFv3_RS20905 and RALBFv3_RS20910 overlap by 4 nucleotides RALBFv3_RS20890: RALBFv3_RS20890 - oxidoreductase, at 1,392,639 to 1,393,445 _RS20890 RALBFv3_RS20895: RALBFv3_RS20895 - TolC family protein, at 1,393,505 to 1,394,965 _RS20895 RALBFv3_RS20900: RALBFv3_RS20900 - TetR/AcrR family transcriptional regulator, at 1,395,053 to 1,395,667 _RS20900 RALBFv3_RS20905: RALBFv3_RS20905 - efflux RND transporter periplasmic adaptor subunit, at 1,395,755 to 1,396,867 _RS20905 RALBFv3_RS20910: RALBFv3_RS20910 - AcrB/AcrD/AcrF family protein, at 1,396,864 to 1,399,986 _RS20910
Group Condition RALBFv3_RS20890 RALBFv3_RS20895 RALBFv3_RS20900 RALBFv3_RS20905 RALBFv3_RS20910
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.2 -0.0 -4.9 +0.0 +0.1
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.1 -0.1 -4.1 +0.1 +0.1
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.1 +0.1 -3.0 +0.1 -0.0
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.1 -0.0 -2.6 +0.0 +0.0
in planta Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days -0.3 +0.3 -2.0 +0.1 -0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.2 -0.0 -1.7 +0.1 -0.2
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days -0.0 -0.1 -1.4 -0.2 -0.0
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.1 -0.0 -1.6 -0.0 -0.0
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.1 +0.1 -1.7 +0.1 +0.1
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 +0.0 -1.5 +0.0 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin +0.1 -0.0 -1.2 -0.2 -0.1
in planta Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi -0.4 -0.0 -1.9 +0.7 +0.1
in planta Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi +0.4 +0.1 -1.5 -0.4 -0.0
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.5 +0.0 -1.5 +0.7 -0.0
in planta tomato xylem local (total stem) +0.6 -0.3 -1.6 +0.0 -0.0
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 +0.0 -1.7 +0.2 -0.0
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.3 +0.2 -1.6 -0.1 -0.1
in planta Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days +0.2 +0.1 -1.5 -0.1 +0.0
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 +0.1 -0.9 -0.4 -0.2
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 +0.0 -1.4 +0.1 -0.1
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 +0.1 -1.3 +0.2 -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.3 +0.1 -1.4 +0.1 -0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.2 -0.1 -0.9 +0.1 -0.2
in planta Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days -0.3 +0.1 -1.1 +0.3 +0.0
in planta tomato xylem local (total stem) +0.2 +0.1 -1.1 -0.1 +0.1
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi +0.4 -0.0 -1.0 -0.0 -0.1
in planta Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days +0.1 +0.2 -1.3 +0.3 -0.1
in planta tomato xylem local (total stem) +0.4 +0.3 -0.9 -0.0 -0.3
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.4 +0.3 -1.2 +0.1 -0.1
in planta Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 -0.2 -1.0 +0.8 -0.1
remove
RALBFv3_RS20890
plot		 remove
RALBFv3_RS20895
plot		 remove
RALBFv3_RS20900		 remove
RALBFv3_RS20905
plot		 remove
RALBFv3_RS20910
plot