Fitness for 5 genes in Ralstonia solanacearum IBSBF1503

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500 ntRALBFv3_RS20045 and RALBFv3_RS20050 are separated by 88 nucleotidesRALBFv3_RS20050 and RALBFv3_RS20055 overlap by 8 nucleotidesRALBFv3_RS20055 and RALBFv3_RS20060 are separated by 36 nucleotidesRALBFv3_RS20060 and RALBFv3_RS20065 are separated by 272 nucleotides RALBFv3_RS20045: RALBFv3_RS20045 - type VI secretion system tube protein Hcp, at 1,191,189 to 1,191,692 _RS20045 RALBFv3_RS20050: RALBFv3_RS20050 - type VI secretion system contractile sheath large subunit, at 1,191,781 to 1,193,271 _RS20050 RALBFv3_RS20055: RALBFv3_RS20055 - type VI secretion system contractile sheath small subunit, at 1,193,264 to 1,193,776 _RS20055 RALBFv3_RS20060: RALBFv3_RS20060 - hypothetical protein, at 1,193,813 to 1,194,460 _RS20060 RALBFv3_RS20065: RALBFv3_RS20065 - type VI secretion system lipoprotein TssJ, at 1,194,733 to 1,195,413 _RS20065
Group Condition RALBFv3_RS20045 RALBFv3_RS20050 RALBFv3_RS20055 RALBFv3_RS20060 RALBFv3_RS20065
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.4 -0.1 -1.8 -0.7 +0.3
in planta Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days -0.7 +0.3 -2.0 +0.5 -0.5
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.7 +0.1 +0.3 -1.5 -0.7
in planta Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days -0.4 -0.3 -2.2 +0.6 -0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.9 +0.6 -2.3 +0.6 -0.4
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -1.0 +0.3 -1.3 -0.1 -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.2 -0.4 -1.7 +0.0 -0.4
in planta tomato xylem local (total stem) -0.2 +0.1 -2.0 +0.4 -0.5
in planta Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days -0.2 +0.4 -2.1 +0.4 -0.6
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin -0.3 +0.1 -1.8 -0.0 +0.1
smsa no antibiotic control SMSA no antibiotic control -0.4 +0.1 -1.7 +0.3 -0.2
in planta Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days -0.6 +0.2 -1.1 +0.3 -0.7
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days +0.2 -0.4 -1.9 +0.7 -0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.6 +0.4 -0.2 +0.1 -0.9
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi -0.8 +0.0 -0.6 +0.6 -0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol -0.5 +0.1 -1.1 +0.3 +0.3
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi -0.7 +0.6 -0.3 +0.4 -1.0
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +0.7 -0.2 -0.4 -0.8 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.2 +0.6 -0.6 +0.3 -0.6
in planta Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days +0.2 +0.5 -1.1 -0.0 +0.6
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.0 +0.4 -0.2 -0.8 +0.8
in planta Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi +0.0 -0.1 +1.8 -0.6 -0.8
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.5 +0.4 +0.3 +0.7 -0.6
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.5 +0.1 +1.0 +0.4 -0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol +0.0 +0.2 +1.4 -0.5 -0.1
in planta Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.2 -0.2 +0.2 +1.6 -0.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.3 -0.0 +1.3 +0.6 -0.5
in planta Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.6 +0.5 +1.3 +0.9 -0.5
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +0.7 -0.1 +1.3 +0.1 -0.2
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi +0.2 +0.5 +2.3 -0.6 -0.7
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