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Cofit
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS15060 and RALBFv3_RS15065 are separated by 176 nucleotides
RALBFv3_RS15065 and RALBFv3_RS15070 are separated by 113 nucleotides
RALBFv3_RS15070 and RALBFv3_RS15075 are separated by 115 nucleotides
RALBFv3_RS15075 and RALBFv3_RS15080 are separated by 63 nucleotides
RALBFv3_RS15060: RALBFv3_RS15060 - esterase, at 3,280,909 to 3,281,868
_RS15060
RALBFv3_RS15065: RALBFv3_RS15065 - glutamate--tRNA ligase, at 3,282,045 to 3,283,442
_RS15065
RALBFv3_RS15070: RALBFv3_RS15070 - tRNA-Ala, at 3,283,556 to 3,283,631
_RS15070
RALBFv3_RS15075: RALBFv3_RS15075 - tRNA-Glu, at 3,283,747 to 3,283,822
_RS15075
RALBFv3_RS15080: RALBFv3_RS15080 - tRNA-Asp, at 3,283,886 to 3,283,962
_RS15080
Group
Condition
RALBFv3
_RS15060
RALBFv3
_RS15065
RALBFv3
_RS15070
RALBFv3
_RS15075
RALBFv3
_RS15080
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.8
N.D.
N.D.
N.D.
N.D.
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.8
N.D.
N.D.
N.D.
N.D.
in planta
tomato xylem local (total stem)
-0.7
N.D.
N.D.
N.D.
N.D.
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.7
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.6
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.5
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.5
N.D.
N.D.
N.D.
N.D.
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.5
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.5
N.D.
N.D.
N.D.
N.D.
xylem sap
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
+0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.4
N.D.
N.D.
N.D.
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.4
N.D.
N.D.
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.4
N.D.
N.D.
N.D.
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.5
N.D.
N.D.
N.D.
N.D.
smsa no antibiotic control
SMSA no antibiotic control
+0.5
N.D.
N.D.
N.D.
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
+0.5
N.D.
N.D.
N.D.
N.D.
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.5
N.D.
N.D.
N.D.
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
+0.5
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.5
N.D.
N.D.
N.D.
N.D.
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.6
N.D.
N.D.
N.D.
N.D.
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.6
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.6
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.8
N.D.
N.D.
N.D.
N.D.
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
+0.8
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.8
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+1.1
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+1.9
N.D.
N.D.
N.D.
N.D.
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