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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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500 nt
RALBFv3_RS14665 and RALBFv3_RS24070 are separated by 116 nucleotides
RALBFv3_RS24070 and RALBFv3_RS14675 are separated by 380 nucleotides
RALBFv3_RS14675 and RALBFv3_RS14680 are separated by 220 nucleotides
RALBFv3_RS14680 and RALBFv3_RS14685 are separated by 22 nucleotides
RALBFv3_RS14665: RALBFv3_RS14665 - XRE family transcriptional regulator, at 3,202,216 to 3,202,557
_RS14665
RALBFv3_RS24070: RALBFv3_RS24070 - transposase, at 3,202,674 to 3,203,315
_RS24070
RALBFv3_RS14675: RALBFv3_RS14675 - hypothetical protein, at 3,203,696 to 3,203,902
_RS14675
RALBFv3_RS14680: RALBFv3_RS14680 - cytochrome P450, at 3,204,123 to 3,205,379
_RS14680
RALBFv3_RS14685: RALBFv3_RS14685 - HD domain-containing protein, at 3,205,402 to 3,206,313
_RS14685
Group
Condition
RALBFv3
_RS14665
RALBFv3
_RS24070
RALBFv3
_RS14675
RALBFv3
_RS14680
RALBFv3
_RS14685
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-1.1
-0.5
-0.4
-0.0
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+1.6
-0.3
-2.4
+0.1
+0.6
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+1.0
-0.2
-0.3
+0.4
-0.7
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+1.7
-0.4
-1.0
+0.2
-0.2
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+1.6
-0.4
-0.5
-0.0
-0.3
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+1.2
-0.2
-0.4
+0.2
-0.3
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+1.3
-0.1
-0.3
+0.1
-0.3
in planta
Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+1.7
-0.4
-1.2
+0.2
+0.5
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+1.3
-0.3
-0.8
+0.3
+0.3
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+1.5
-0.3
-0.2
+0.1
-0.3
in planta
Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
+1.5
-0.6
+0.1
+0.3
-0.3
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+1.4
-0.2
+0.1
+0.1
-0.5
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+1.6
-0.2
-0.3
+0.0
-0.1
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+1.5
-0.3
-0.4
+0.2
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+1.5
-0.7
-0.0
+0.1
+0.4
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+1.6
-0.4
+0.2
+0.1
-0.2
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+1.2
+0.2
-0.4
+0.2
+0.2
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+1.3
+0.2
-0.5
+0.4
+0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+1.7
-0.1
+0.0
+0.0
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+1.6
-0.3
-0.1
+0.1
+0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+1.6
-0.2
-0.2
-0.0
+0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+1.8
+0.2
-0.1
+0.2
-0.3
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+1.9
+0.0
+0.1
+0.2
-0.2
in planta
tomato xylem local (total stem)
+2.2
-0.8
+0.6
+0.2
-0.2
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+1.6
-0.5
+0.8
+0.2
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+1.5
-0.0
+0.6
+0.2
-0.2
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+1.4
-0.3
+0.6
+0.1
+0.5
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+1.9
-0.0
+0.4
+0.1
-0.1
in planta
tomato xylem local (total stem)
+1.8
-0.0
+0.2
+0.5
+0.4
in planta
tomato xylem local (total stem)
+1.7
+1.2
+1.5
+0.1
+0.0
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RALBFv3_RS14675
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RALBFv3_RS14685
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