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Cofit
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS14525 and RALBFv3_RS14530 are separated by 69 nucleotides
RALBFv3_RS14530 and RALBFv3_RS14535 are separated by 137 nucleotides
RALBFv3_RS14535 and RALBFv3_RS14540 are separated by 53 nucleotides
RALBFv3_RS14540 and RALBFv3_RS14545 are separated by 96 nucleotides
RALBFv3_RS14525: RALBFv3_RS14525 - excinuclease ABC subunit UvrC, at 3,171,203 to 3,173,209
_RS14525
RALBFv3_RS14530: RALBFv3_RS14530 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,173,279 to 3,173,854
_RS14530
RALBFv3_RS14535: RALBFv3_RS14535 - tRNA-Gly, at 3,173,992 to 3,174,067
_RS14535
RALBFv3_RS14540: RALBFv3_RS14540 - tRNA-Gly, at 3,174,121 to 3,174,196
_RS14540
RALBFv3_RS14545: RALBFv3_RS14545 - tRNA-Cys, at 3,174,293 to 3,174,366
_RS14545
Group
Condition
RALBFv3
_RS14525
RALBFv3
_RS14530
RALBFv3
_RS14535
RALBFv3
_RS14540
RALBFv3
_RS14545
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-1.0
N.D.
N.D.
N.D.
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.8
N.D.
N.D.
N.D.
N.D.
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.7
N.D.
N.D.
N.D.
N.D.
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.5
N.D.
N.D.
N.D.
N.D.
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.4
N.D.
N.D.
N.D.
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.3
N.D.
N.D.
N.D.
N.D.
m63_quarter_strength
M63_quarter_strength
+0.3
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.3
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.3
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.4
N.D.
N.D.
N.D.
N.D.
m63_quarter_strength
M63_quarter_strength
+0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.5
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.6
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.6
N.D.
N.D.
N.D.
N.D.
in planta
tomato xylem local (total stem)
+0.7
N.D.
N.D.
N.D.
N.D.
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.7
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.7
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.7
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.7
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.9
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.9
N.D.
N.D.
N.D.
N.D.
in planta
tomato xylem local (total stem)
+1.0
N.D.
N.D.
N.D.
N.D.
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RALBFv3_RS14535
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RALBFv3_RS14545
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