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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS13925 and RALBFv3_RS13930 are separated by 95 nucleotides
RALBFv3_RS13930 and RALBFv3_RS13935 are separated by 7 nucleotides
RALBFv3_RS13935 and RALBFv3_RS13940 are separated by 24 nucleotides
RALBFv3_RS13940 and RALBFv3_RS13945 overlap by 4 nucleotides
RALBFv3_RS13925: RALBFv3_RS13925 - CoA pyrophosphatase, at 3,046,856 to 3,047,539
_RS13925
RALBFv3_RS13930: RALBFv3_RS13930 - cobalamin biosynthesis protein CobD, at 3,047,635 to 3,048,576
_RS13930
RALBFv3_RS13935: RALBFv3_RS13935 - hypothetical protein, at 3,048,584 to 3,048,898
_RS13935
RALBFv3_RS13940: RALBFv3_RS13940 - ribosome small subunit-dependent GTPase A, at 3,048,923 to 3,049,879
_RS13940
RALBFv3_RS13945: RALBFv3_RS13945 - peptidase M48, at 3,049,876 to 3,051,132
_RS13945
Group
Condition
RALBFv3
_RS13925
RALBFv3
_RS13930
RALBFv3
_RS13935
RALBFv3
_RS13940
RALBFv3
_RS13945
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.6
-3.7
N.D.
N.D.
-1.2
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.9
-2.4
N.D.
N.D.
-0.4
in planta
tomato xylem local (total stem)
-0.0
-0.4
N.D.
N.D.
-2.8
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.0
-3.2
N.D.
N.D.
-0.0
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.6
-3.4
N.D.
N.D.
-0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.2
-2.9
N.D.
N.D.
+0.1
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.1
-1.5
N.D.
N.D.
-1.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.1
-2.8
N.D.
N.D.
+0.0
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.6
-2.3
N.D.
N.D.
+0.1
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.4
-2.4
N.D.
N.D.
-0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.0
-2.6
N.D.
N.D.
+0.1
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.4
-2.8
N.D.
N.D.
+0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.1
-2.1
N.D.
N.D.
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.1
-1.5
N.D.
N.D.
-0.7
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.0
-2.0
N.D.
N.D.
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.1
-2.0
N.D.
N.D.
-0.2
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
-0.1
-1.5
N.D.
N.D.
-0.4
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.4
-3.0
N.D.
N.D.
+0.5
in planta
tomato xylem local (total stem)
-0.3
-0.4
N.D.
N.D.
-1.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.2
-2.1
N.D.
N.D.
+0.0
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
+0.0
-0.3
N.D.
N.D.
-1.7
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
+0.0
-0.6
N.D.
N.D.
-1.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.1
-1.8
N.D.
N.D.
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.1
-3.0
N.D.
N.D.
+1.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.1
-2.2
N.D.
N.D.
+0.5
m63_quarter_strength
M63_quarter_strength
-0.1
-1.6
N.D.
N.D.
+0.0
in planta
Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
-0.9
+0.2
N.D.
N.D.
-0.7
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.4
+0.5
N.D.
N.D.
-1.1
m63_quarter_strength
M63_quarter_strength
+0.2
-0.8
N.D.
N.D.
+0.9
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.3
-0.0
N.D.
N.D.
+1.5
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