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Cofit
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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500 nt
RALBFv3_RS13880 and RALBFv3_RS13885 are separated by 1 nucleotides
RALBFv3_RS13885 and RALBFv3_RS13890 are separated by 199 nucleotides
RALBFv3_RS13890 and RALBFv3_RS13895 are separated by 135 nucleotides
RALBFv3_RS13895 and RALBFv3_RS13900 are separated by 184 nucleotides
RALBFv3_RS13880: RALBFv3_RS13880 - radical SAM protein, at 3,040,605 to 3,041,732
_RS13880
RALBFv3_RS13885: RALBFv3_RS13885 - NINE protein, at 3,041,734 to 3,042,189
_RS13885
RALBFv3_RS13890: RALBFv3_RS13890 - hypothetical protein, at 3,042,389 to 3,042,570
_RS13890
RALBFv3_RS13895: RALBFv3_RS13895 - hypothetical protein, at 3,042,706 to 3,043,110
_RS13895
RALBFv3_RS13900: RALBFv3_RS13900 - sorbosone dehydrogenase, at 3,043,295 to 3,044,371
_RS13900
Group
Condition
RALBFv3
_RS13880
RALBFv3
_RS13885
RALBFv3
_RS13890
RALBFv3
_RS13895
RALBFv3
_RS13900
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.4
-0.7
-1.4
N.D.
-0.3
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-1.8
-1.1
N.D.
+0.7
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.1
-1.0
-0.6
N.D.
-0.2
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.1
-0.6
-0.5
N.D.
-0.4
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.2
-1.1
-0.3
N.D.
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.1
-0.9
-0.3
N.D.
+0.0
in planta
tomato xylem local (total stem)
+0.1
-0.9
-0.3
N.D.
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.0
-1.7
+0.2
N.D.
+0.6
m63_quarter_strength
M63_quarter_strength
-0.1
-0.2
-0.7
N.D.
+0.1
in planta
tomato xylem local (total stem)
-0.0
+0.0
-1.0
N.D.
+0.2
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.4
-1.1
+0.3
N.D.
+0.5
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.1
-0.4
-0.6
N.D.
+0.2
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-0.8
+0.2
N.D.
+0.2
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.2
-0.8
+0.2
N.D.
+0.3
in planta
Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.4
-0.6
+0.4
N.D.
+0.2
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.2
-0.5
-0.1
N.D.
+0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-1.0
+0.3
N.D.
+0.4
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.2
-0.6
-0.0
N.D.
+0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.5
+0.2
N.D.
+0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.4
+0.6
-0.6
N.D.
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
+0.0
+0.3
-0.6
N.D.
+0.3
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.3
+0.3
-0.4
N.D.
+0.5
cpg
CPG
+0.0
+0.9
-0.5
N.D.
+0.1
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.2
+0.9
-0.1
N.D.
+0.4
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-0.1
+0.6
N.D.
+0.8
in planta
Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
+0.6
+0.4
N.D.
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.0
+1.3
-0.1
N.D.
+0.2
in planta
Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
-0.4
+1.2
+0.1
N.D.
+1.1
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
+1.6
+0.0
N.D.
+0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.0
+1.4
+0.2
N.D.
+0.4
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