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Cofit
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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500 nt
RALBFv3_RS23970 and RALBFv3_RS12065 are separated by 188 nucleotides
RALBFv3_RS12065 and RALBFv3_RS12070 are separated by 220 nucleotides
RALBFv3_RS12070 and RALBFv3_RS12075 are separated by 224 nucleotides
RALBFv3_RS12075 and RALBFv3_RS23975 overlap by 1 nucleotides
RALBFv3_RS23970: RALBFv3_RS23970 - hypothetical protein, at 2,661,965 to 2,663,167
_RS23970
RALBFv3_RS12065: RALBFv3_RS12065 - hypothetical protein, at 2,663,356 to 2,663,865
_RS12065
RALBFv3_RS12070: RALBFv3_RS12070 - resolvase, at 2,664,086 to 2,664,475
_RS12070
RALBFv3_RS12075: RALBFv3_RS12075 - hypothetical protein, at 2,664,700 to 2,664,900
_RS12075
RALBFv3_RS23975: RALBFv3_RS23975 - hypothetical protein, at 2,664,900 to 2,665,259
_RS23975
Group
Condition
RALBFv3
_RS23970
RALBFv3
_RS12065
RALBFv3
_RS12070
RALBFv3
_RS12075
RALBFv3
_RS23975
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-0.1
-0.4
-0.3
-0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-0.1
-0.5
-0.3
-0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-0.1
-0.5
-0.4
-0.2
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
N.D.
-0.0
-0.3
-0.1
-0.7
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
N.D.
-0.0
-0.5
-0.2
-0.4
in planta
Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
N.D.
-0.2
-0.4
-0.2
-0.4
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-0.2
-0.5
-0.1
-0.2
in planta
tomato xylem local (total stem)
N.D.
+0.0
-0.3
-0.7
-0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-0.2
-0.3
-0.3
-0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-0.1
-0.3
-0.1
-0.4
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-0.2
-0.3
-0.3
-0.0
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-0.2
-0.2
-0.1
-0.3
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
N.D.
-0.1
-0.4
-0.2
-0.2
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
N.D.
+0.0
-0.5
-0.3
-0.1
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-0.1
-0.3
-0.3
-0.1
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-0.1
-0.2
-0.1
-0.4
in planta
tomato xylem local (total stem)
N.D.
+0.1
+0.3
-0.4
-0.6
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
N.D.
+0.1
-0.4
-0.2
-0.1
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
N.D.
-0.2
-0.4
-0.2
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-0.1
-0.3
-0.3
+0.0
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
N.D.
-0.1
-0.3
+0.1
-0.1
in planta
tomato xylem local (total stem)
N.D.
+0.2
-0.8
+0.1
+0.1
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-0.1
-0.3
+0.2
-0.1
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
N.D.
-0.1
-0.5
+0.2
+0.0
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
N.D.
-0.0
+0.3
+0.1
-0.3
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
N.D.
+0.5
-0.4
-0.0
-0.1
xylem sap
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
N.D.
-0.0
-0.3
+0.1
+0.3
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
N.D.
-0.0
+0.5
+0.0
-0.2
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
N.D.
+0.4
-0.4
+0.1
+0.4
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
N.D.
+0.5
-0.2
+0.3
+0.1
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