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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS11870 and RALBFv3_RS11875 are separated by 683 nucleotides
RALBFv3_RS11875 and RALBFv3_RS11880 are separated by 5 nucleotides
RALBFv3_RS11880 and RALBFv3_RS11885 are separated by 49 nucleotides
RALBFv3_RS11885 and RALBFv3_RS11890 are separated by 153 nucleotides
RALBFv3_RS11870: RALBFv3_RS11870 - TetR/AcrR family transcriptional regulator, at 2,614,607 to 2,615,656
_RS11870
RALBFv3_RS11875: RALBFv3_RS11875 - RNA helicase, at 2,616,340 to 2,617,989
_RS11875
RALBFv3_RS11880: RALBFv3_RS11880 - serine/threonine protein kinase, at 2,617,995 to 2,619,038
_RS11880
RALBFv3_RS11885: RALBFv3_RS11885 - pirin family protein, at 2,619,088 to 2,619,984
_RS11885
RALBFv3_RS11890: RALBFv3_RS11890 - LysR family transcriptional regulator, at 2,620,138 to 2,621,055
_RS11890
Group
Condition
RALBFv3
_RS11870
RALBFv3
_RS11875
RALBFv3
_RS11880
RALBFv3
_RS11885
RALBFv3
_RS11890
in planta
Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
-0.4
+0.0
-0.4
+0.4
-0.5
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.5
+0.1
+0.0
-0.3
-0.9
cpg
CPG
+0.2
-0.5
+0.1
+0.1
-0.5
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.2
+0.1
+0.1
-0.3
-0.5
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.3
+0.7
+0.2
-0.4
-1.0
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.2
+1.1
+0.2
-0.6
-0.3
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.3
+0.9
-0.1
+0.2
-0.1
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.5
+1.3
+0.2
-0.5
-0.9
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.1
+0.9
+0.1
+0.1
-0.2
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.0
+1.3
+0.2
-0.2
-0.3
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.3
+1.5
+0.0
+0.1
-0.5
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
+0.8
+0.0
+0.3
-0.0
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.0
+0.7
+0.1
+0.4
-0.2
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
+0.9
-0.2
+0.2
+0.2
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.5
+1.4
+0.2
-0.1
+0.1
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.2
+1.3
+0.0
+0.2
-0.3
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.3
+1.2
-0.1
+0.4
-0.2
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
+0.8
+0.3
+0.3
-0.1
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.5
+1.5
+0.1
+0.0
-0.5
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
+1.8
-0.1
+0.0
-0.1
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
+0.3
+0.6
+0.4
+0.2
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.1
+1.2
+0.1
+0.1
+0.4
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.0
+0.7
+0.4
+0.3
+0.2
in planta
tomato xylem local (total stem)
+0.3
+0.8
+0.2
+0.2
+0.1
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.2
+1.4
+0.1
-0.1
+0.2
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
+1.1
+0.0
+0.4
+0.3
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.1
+1.4
+0.1
+0.2
+0.3
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.2
+2.1
+0.1
-0.0
-0.1
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.1
+2.3
+0.0
+0.2
+0.3
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.4
+4.0
-0.0
+0.5
+0.2
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RALBFv3_RS11880
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