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Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS11215 and RALBFv3_RS11220 are separated by 62 nucleotides
RALBFv3_RS11220 and RALBFv3_RS11225 are separated by 25 nucleotides
RALBFv3_RS11225 and RALBFv3_RS11230 are separated by 3 nucleotides
RALBFv3_RS11230 and RALBFv3_RS11235 are separated by 80 nucleotides
RALBFv3_RS11215: RALBFv3_RS11215 - adenine phosphoribosyltransferase, at 2,472,135 to 2,472,770
_RS11215
RALBFv3_RS11220: RALBFv3_RS11220 - LysE family translocator, at 2,472,833 to 2,473,453
_RS11220
RALBFv3_RS11225: RALBFv3_RS11225 - Na/Pi cotransporter family protein, at 2,473,479 to 2,475,143
_RS11225
RALBFv3_RS11230: RALBFv3_RS11230 - membrane protein, at 2,475,147 to 2,475,632
_RS11230
RALBFv3_RS11235: RALBFv3_RS11235 - excinuclease ABC subunit UvrA, at 2,475,713 to 2,478,577
_RS11235
Group
Condition
RALBFv3
_RS11215
RALBFv3
_RS11220
RALBFv3
_RS11225
RALBFv3
_RS11230
RALBFv3
_RS11235
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.3
-2.4
+0.4
N.D.
+0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-0.1
-0.5
-0.5
N.D.
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.2
-0.8
-0.2
N.D.
-0.0
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.4
-0.9
-0.1
N.D.
+0.3
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-1.1
-0.4
N.D.
+0.4
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.2
-0.9
+0.3
N.D.
-0.1
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-0.4
-0.7
N.D.
+0.3
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.3
-0.9
+0.6
N.D.
+0.1
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
-1.0
+0.1
N.D.
+0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.2
-0.8
+0.4
N.D.
+0.2
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.0
-0.4
+0.6
N.D.
-0.5
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.2
-0.3
+0.9
N.D.
-0.4
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.3
-0.8
+0.9
N.D.
+0.2
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.1
-0.6
+0.5
N.D.
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
-0.7
+0.5
N.D.
+0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.1
-0.6
+0.3
N.D.
+0.4
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.5
+0.7
N.D.
+0.3
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.1
-0.4
+0.6
N.D.
+0.2
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.1
+0.8
-0.0
N.D.
-0.4
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
-0.5
+0.0
N.D.
+0.7
in planta
Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
-1.3
+1.1
N.D.
+0.6
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.2
+0.6
+0.2
N.D.
-0.2
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
+0.1
+0.3
+0.6
N.D.
-0.3
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
+0.3
-0.3
+0.6
N.D.
+0.2
cpg no stress control
CPG no stress control
+0.1
-0.2
+0.8
N.D.
+0.2
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.0
-0.7
+1.7
N.D.
+0.2
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.2
+0.7
+0.5
N.D.
-0.1
in planta
Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
+0.7
-0.8
+1.4
N.D.
+0.2
in planta
tomato xylem local (total stem)
+0.2
+0.1
+0.7
N.D.
+0.6
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
+2.6
-0.1
N.D.
+0.5
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