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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS09335 and RALBFv3_RS09340 overlap by 63 nucleotides
RALBFv3_RS09340 and RALBFv3_RS09345 overlap by 4 nucleotides
RALBFv3_RS09345 and RALBFv3_RS23855 are separated by 97 nucleotides
RALBFv3_RS23855 and RALBFv3_RS23860 are separated by 53 nucleotides
RALBFv3_RS09335: RALBFv3_RS09335 - hypothetical protein, at 2,069,153 to 2,069,779
_RS09335
RALBFv3_RS09340: RALBFv3_RS09340 - chromosome partitioning protein ParB, at 2,069,717 to 2,070,586
_RS09340
RALBFv3_RS09345: RALBFv3_RS09345 - chromosome partitioning protein ParB, at 2,070,583 to 2,071,485
_RS09345
RALBFv3_RS23855: RALBFv3_RS23855 - hypothetical protein, at 2,071,583 to 2,072,950
_RS23855
RALBFv3_RS23860: RALBFv3_RS23860 - hypothetical protein, at 2,073,004 to 2,074,131
_RS23860
Group
Condition
RALBFv3
_RS09335
RALBFv3
_RS09340
RALBFv3
_RS09345
RALBFv3
_RS23855
RALBFv3
_RS23860
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.2
-0.1
-0.2
-0.1
-0.1
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
-0.2
-0.1
-0.1
-0.2
-0.1
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.2
+0.0
-0.2
-0.3
-0.1
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.2
-0.2
-0.0
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.3
-0.0
-0.2
-0.1
-0.1
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.2
-0.1
-0.3
-0.0
+0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.0
-0.1
-0.2
-0.1
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-0.1
-0.3
-0.0
-0.0
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.3
-0.2
-0.0
+0.1
-0.1
in planta
tomato xylem local (total stem)
-0.2
-0.1
+0.0
-0.2
-0.1
in planta
Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
-0.2
-0.0
-0.2
-0.0
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.2
-0.0
-0.1
-0.1
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.2
-0.1
-0.1
+0.0
-0.1
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.2
+0.0
+0.0
+0.0
m63_quarter_strength
M63_quarter_strength
-0.0
-0.1
-0.2
-0.0
+0.1
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.2
-0.2
+0.1
-0.1
+0.0
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.1
+0.1
-0.1
-0.0
in planta
tomato xylem local (total stem)
-0.1
+0.1
-0.0
-0.2
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-0.1
+0.1
-0.3
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
-0.1
-0.0
-0.3
+0.2
in planta
tomato xylem local (total stem)
-0.2
-0.2
-0.1
+0.1
+0.2
in planta
Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
-0.1
+0.3
-0.3
-0.1
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.1
+0.1
+0.2
-0.1
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-0.2
+0.1
-0.0
+0.2
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.1
-0.1
+0.1
-0.0
+0.3
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.1
-0.1
+0.0
+0.1
-0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.1
-0.0
+0.2
-0.2
+0.1
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.1
-0.2
+0.2
+0.2
+0.0
in planta
Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.0
-0.1
+0.3
+0.3
+0.0
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.0
-0.0
+0.2
+0.3
+0.0
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RALBFv3_RS09340
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RALBFv3_RS09345
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RALBFv3_RS23855
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RALBFv3_RS23860
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