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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS07935 and RALBFv3_RS23760 are separated by 295 nucleotides
RALBFv3_RS23760 and RALBFv3_RS07940 are separated by 523 nucleotides
RALBFv3_RS07940 and RALBFv3_RS07945 are separated by 108 nucleotides
RALBFv3_RS07945 and RALBFv3_RS07950 are separated by 723 nucleotides
RALBFv3_RS07935: RALBFv3_RS07935 - hypothetical protein, at 1,748,859 to 1,749,359
_RS07935
RALBFv3_RS23760: RALBFv3_RS23760 - type III effector, at 1,749,655 to 1,750,098
_RS23760
RALBFv3_RS07940: RALBFv3_RS07940 - tryptophan 2-monooxygenase oxidoreductase, at 1,750,622 to 1,752,775
_RS07940
RALBFv3_RS07945: RALBFv3_RS07945 - hypothetical protein, at 1,752,884 to 1,753,156
_RS07945
RALBFv3_RS07950: RALBFv3_RS07950 - VOC family protein, at 1,753,880 to 1,754,383
_RS07950
Group
Condition
RALBFv3
_RS07935
RALBFv3
_RS23760
RALBFv3
_RS07940
RALBFv3
_RS07945
RALBFv3
_RS07950
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.0
+0.2
-0.1
-1.5
-0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.2
+0.2
-0.1
-1.0
-0.0
cpg
CPG
-0.2
+0.1
-0.1
-0.7
+0.0
in planta
Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
+0.2
+0.2
-0.7
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
+0.3
-0.0
-0.6
-0.3
in planta
tomato xylem local (total stem)
+0.1
+0.0
+0.0
-0.9
+0.2
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.3
-0.0
-0.0
+0.1
-0.7
smsa no antibiotic control
SMSA no antibiotic control
-0.2
+0.3
-0.0
-0.4
-0.1
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.6
+0.6
+0.0
-0.4
-0.0
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.3
+0.2
-0.2
+0.3
-0.3
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
-0.1
+0.3
+0.0
-0.5
+0.1
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
-0.2
+0.6
+0.0
-0.4
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.3
+0.4
-0.2
-0.3
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
+0.4
-0.0
-0.6
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.4
+0.4
-0.0
-0.3
-0.3
in planta
tomato xylem local (total stem)
+0.1
+0.8
-0.1
-0.7
+0.1
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-0.2
-0.2
+1.4
-0.2
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.1
+0.4
-0.1
-0.1
+0.3
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
+0.8
-0.0
+0.1
-0.4
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.1
+0.0
+0.0
+0.7
-0.2
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.3
+0.6
+0.3
-0.1
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
+0.1
+0.1
+0.8
+0.2
in planta
Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
-0.1
-0.0
+1.2
-0.4
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
+0.5
-0.1
+0.2
+0.2
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.5
+0.2
+0.0
+0.6
-0.2
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.1
+0.4
-0.0
+0.7
+0.0
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.2
+0.4
-0.1
+0.7
+0.3
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.1
+0.4
-0.0
+0.6
+0.1
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
+0.0
+0.0
+1.2
-0.0
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
+0.3
+0.1
+1.6
+0.0
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RALBFv3_RS07940
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RALBFv3_RS07950
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