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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS06935 and RALBFv3_RS06940 overlap by 4 nucleotides
RALBFv3_RS06940 and RALBFv3_RS06945 are separated by 173 nucleotides
RALBFv3_RS06945 and RALBFv3_RS06950 overlap by 4 nucleotides
RALBFv3_RS06950 and RALBFv3_RS06955 overlap by 4 nucleotides
RALBFv3_RS06935: RALBFv3_RS06935 - 3-dehydroquinate synthase, at 1,539,335 to 1,540,441
_RS06935
RALBFv3_RS06940: RALBFv3_RS06940 - shikimate kinase, at 1,540,438 to 1,540,977
_RS06940
RALBFv3_RS06945: RALBFv3_RS06945 - type IV pilus secretin PilQ, at 1,541,151 to 1,543,292
_RS06945
RALBFv3_RS06950: RALBFv3_RS06950 - pilus assembly protein PilP, at 1,543,289 to 1,543,834
_RS06950
RALBFv3_RS06955: RALBFv3_RS06955 - pilus assembly protein PilO, at 1,543,831 to 1,544,490
_RS06955
Group
Condition
RALBFv3
_RS06935
RALBFv3
_RS06940
RALBFv3
_RS06945
RALBFv3
_RS06950
RALBFv3
_RS06955
m63_quarter_strength
M63_quarter_strength
N.D.
-3.9
-0.2
-0.9
-0.5
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-4.2
-0.3
+0.1
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-4.4
+0.0
+0.2
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-4.2
-0.1
+0.3
-0.4
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-2.0
-0.6
-0.7
-0.8
m63_quarter_strength
M63_quarter_strength
N.D.
-3.0
-0.3
-0.4
-0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-3.7
-0.1
-0.1
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-3.7
-0.0
-0.1
-0.0
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-1.2
-0.6
-0.8
-1.0
cpg
CPG
N.D.
-4.5
+0.3
+0.5
+0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-3.1
+0.1
-0.2
-0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
-4.7
+0.7
+0.5
+0.7
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
N.D.
-2.4
+0.2
-0.5
+0.7
in planta
tomato xylem local (total stem)
N.D.
+0.6
-0.7
-0.7
-1.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
-4.5
+1.0
+0.9
+0.7
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
-4.0
+0.9
+0.5
+0.8
cpg
CPG
N.D.
-3.2
+0.5
+0.4
+0.5
in planta
tomato xylem local (total stem)
N.D.
+1.2
-0.8
-0.3
-1.7
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
-4.1
+0.9
+1.1
+0.6
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
-4.7
+1.0
+1.0
+1.3
cpg
CPG
N.D.
-2.3
+0.4
+0.3
+0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
-4.3
+1.0
+0.9
+1.3
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
N.D.
+1.5
-0.8
-0.3
-0.6
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
N.D.
+1.6
-0.8
-0.1
-0.7
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
N.D.
+1.8
-0.3
-0.2
-0.9
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
N.D.
+2.0
-0.3
-0.6
-0.4
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
+2.3
-0.2
-0.0
-0.7
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
N.D.
+2.4
-0.3
+0.4
-1.0
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
+2.6
-0.5
-0.2
-0.1
in planta
Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
+2.0
+0.3
+0.3
+0.8
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