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Cofit
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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500 nt
RALBFv3_RS06695 and RALBFv3_RS06700 are separated by 153 nucleotides
RALBFv3_RS06700 and RALBFv3_RS06705 are separated by 196 nucleotides
RALBFv3_RS06705 and RALBFv3_RS06710 are separated by 29 nucleotides
RALBFv3_RS06710 and RALBFv3_RS06715 are separated by 60 nucleotides
RALBFv3_RS06695: RALBFv3_RS06695 - alpha/beta hydrolase, at 1,492,396 to 1,493,175
_RS06695
RALBFv3_RS06700: RALBFv3_RS06700 - LysR family transcriptional regulator, at 1,493,329 to 1,494,198
_RS06700
RALBFv3_RS06705: RALBFv3_RS06705 - tRNA-Thr, at 1,494,395 to 1,494,470
_RS06705
RALBFv3_RS06710: RALBFv3_RS06710 - ClpXP protease specificity-enhancing factor, at 1,494,500 to 1,495,000
_RS06710
RALBFv3_RS06715: RALBFv3_RS06715 - stringent starvation protein A, at 1,495,061 to 1,495,672
_RS06715
Group
Condition
RALBFv3
_RS06695
RALBFv3
_RS06700
RALBFv3
_RS06705
RALBFv3
_RS06710
RALBFv3
_RS06715
in planta
tomato xylem local (total stem)
-1.1
-0.3
N.D.
-0.8
N.D.
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.5
+0.1
N.D.
-1.8
N.D.
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.2
-0.1
N.D.
-1.6
N.D.
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
-0.6
+0.2
N.D.
-1.4
N.D.
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-1.1
+0.1
N.D.
-0.5
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-1.0
-0.1
N.D.
-0.4
N.D.
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.8
-0.1
N.D.
-0.6
N.D.
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.5
-0.1
N.D.
-0.8
N.D.
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-1.5
-0.1
N.D.
+0.1
N.D.
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-1.5
-0.2
N.D.
+0.2
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
-0.4
N.D.
-0.8
N.D.
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.3
-0.3
N.D.
-0.7
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
-0.3
-0.0
N.D.
-1.1
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.6
-0.1
N.D.
-0.5
N.D.
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-1.0
-0.2
N.D.
+0.1
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.4
-0.1
N.D.
-0.7
N.D.
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-1.4
-0.0
N.D.
+0.3
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.6
+0.2
N.D.
-0.7
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
-0.2
N.D.
-0.7
N.D.
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
-0.7
-0.1
N.D.
-0.3
N.D.
in planta
Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
-0.8
-0.4
N.D.
+0.2
N.D.
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.3
-0.3
N.D.
-1.0
N.D.
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.4
-0.0
N.D.
-1.1
N.D.
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
+0.2
-0.3
N.D.
-0.6
N.D.
m63_quarter_strength
M63_quarter_strength
+0.6
+0.2
N.D.
-1.3
N.D.
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.6
-0.5
N.D.
+0.7
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.5
+0.1
N.D.
-0.6
N.D.
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.4
-0.3
N.D.
+0.7
N.D.
in planta
Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.1
-0.1
N.D.
+0.9
N.D.
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.0
-0.2
N.D.
+0.9
N.D.
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