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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS05665 and RALBFv3_RS05670 are separated by 11 nucleotides
RALBFv3_RS05670 and RALBFv3_RS05675 are separated by 32 nucleotides
RALBFv3_RS05675 and RALBFv3_RS05680 are separated by 76 nucleotides
RALBFv3_RS05680 and RALBFv3_RS05685 overlap by 7 nucleotides
RALBFv3_RS05665: RALBFv3_RS05665 - hypothetical protein, at 1,260,986 to 1,261,426
_RS05665
RALBFv3_RS05670: RALBFv3_RS05670 - hypothetical protein, at 1,261,438 to 1,261,641
_RS05670
RALBFv3_RS05675: RALBFv3_RS05675 - DNA helicase RecG, at 1,261,674 to 1,263,866
_RS05675
RALBFv3_RS05680: RALBFv3_RS05680 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 1,263,943 to 1,265,031
_RS05680
RALBFv3_RS05685: RALBFv3_RS05685 - tRNA guanosine(34) transglycosylase Tgt, at 1,265,025 to 1,266,176
_RS05685
Group
Condition
RALBFv3
_RS05665
RALBFv3
_RS05670
RALBFv3
_RS05675
RALBFv3
_RS05680
RALBFv3
_RS05685
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.3
N.D.
-0.7
-3.3
-3.7
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.3
N.D.
-0.3
-3.7
-3.8
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.2
N.D.
-0.3
-2.4
-4.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
N.D.
-0.5
-3.2
-2.7
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.4
N.D.
-0.4
-2.2
-2.6
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.2
N.D.
-0.5
-3.2
-1.5
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.2
N.D.
-0.1
-2.8
-2.0
cpg no stress control
CPG no stress control
+0.2
N.D.
-0.6
-2.4
-2.0
cpg
CPG
-0.1
N.D.
-0.3
-2.8
-1.5
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.2
N.D.
-0.3
-2.5
-2.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
N.D.
-0.6
-1.3
-2.6
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
N.D.
-0.7
-2.5
-1.2
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.2
N.D.
-0.7
-1.2
-2.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
+0.0
N.D.
-0.3
-1.9
-2.2
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.3
N.D.
-0.6
-1.3
-2.2
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.1
N.D.
-0.7
-2.4
-1.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
+0.2
N.D.
-1.5
-1.8
-1.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.2
N.D.
-1.7
-1.7
-1.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.1
N.D.
-1.1
-1.2
-1.7
stress
SMSA with Ralstonia_antibiotic_mix
+0.1
N.D.
-1.1
-0.6
-2.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.2
N.D.
+0.0
-1.5
-2.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.3
N.D.
-0.3
-2.4
-0.9
in planta
tomato xylem local (total stem)
-0.4
N.D.
-0.5
-1.7
-1.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
-0.0
N.D.
-0.5
-0.6
-2.7
in planta
tomato xylem local (total stem)
-0.0
N.D.
-1.1
-1.3
-1.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.0
N.D.
-1.7
-0.6
-1.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.1
N.D.
-1.3
-0.8
-1.5
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.6
N.D.
-0.5
-1.7
-1.9
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.1
N.D.
-1.5
-1.1
-0.9
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+0.1
N.D.
-0.6
-1.0
-1.8
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