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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS05040 and RALBFv3_RS05045 are separated by 4 nucleotides
RALBFv3_RS05045 and RALBFv3_RS05050 are separated by 282 nucleotides
RALBFv3_RS05050 and RALBFv3_RS05055 are separated by 93 nucleotides
RALBFv3_RS05055 and RALBFv3_RS05060 are separated by 146 nucleotides
RALBFv3_RS05040: RALBFv3_RS05040 - DUF2167 domain-containing protein, at 1,121,831 to 1,122,742
_RS05040
RALBFv3_RS05045: RALBFv3_RS05045 - site-2 protease family protein, at 1,122,747 to 1,123,472
_RS05045
RALBFv3_RS05050: RALBFv3_RS05050 - beta-ketoacyl-ACP reductase, at 1,123,755 to 1,124,507
_RS05050
RALBFv3_RS05055: RALBFv3_RS05055 - superoxide dismutase, at 1,124,601 to 1,125,179
_RS05055
RALBFv3_RS05060: RALBFv3_RS05060 - exodeoxyribonuclease VII large subunit, at 1,125,326 to 1,126,732
_RS05060
Group
Condition
RALBFv3
_RS05040
RALBFv3
_RS05045
RALBFv3
_RS05050
RALBFv3
_RS05055
RALBFv3
_RS05060
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.0
+0.1
+0.1
N.D.
-2.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.0
+0.1
+0.2
N.D.
-2.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.1
-0.1
+0.0
N.D.
-1.7
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.1
+0.0
+0.1
N.D.
-1.9
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.1
+0.0
+0.1
N.D.
-2.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+0.1
+0.0
-0.1
N.D.
-1.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.1
+0.1
+0.3
N.D.
-1.9
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.0
-0.0
-0.2
N.D.
-1.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
+0.1
+0.1
-0.0
N.D.
-1.6
stress
SMSA with Ralstonia_antibiotic_mix
-0.0
-0.1
+0.0
N.D.
-1.2
stress
SMSA with Ralstonia_antibiotic_mix
+0.0
+0.2
+0.3
N.D.
-1.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.0
+0.0
+0.2
N.D.
-1.1
stress
SMSA with Ralstonia_antibiotic_mix
-0.2
+0.1
+0.1
N.D.
-0.9
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.0
-0.4
-0.7
N.D.
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.2
+0.2
-0.0
N.D.
-0.9
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+0.0
-0.1
+0.3
N.D.
-0.8
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.3
+0.2
-0.6
N.D.
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.5
+0.3
-0.3
N.D.
-0.2
in planta
tomato xylem local (total stem)
+0.3
-0.3
-0.1
N.D.
+0.6
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.8
-0.2
+0.4
N.D.
-0.4
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.6
-0.0
-0.3
N.D.
+0.4
in planta
tomato xylem local (total stem)
+0.8
-0.7
+0.2
N.D.
+0.7
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.8
-0.1
+0.2
N.D.
+0.1
in planta
tomato xylem local (total stem)
+0.5
-0.3
+0.5
N.D.
+0.5
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.4
+0.3
-0.0
N.D.
+0.5
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.6
-0.0
+0.1
N.D.
+0.8
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.4
+0.3
+0.2
N.D.
+0.6
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+1.0
+0.2
+0.5
N.D.
-0.1
in planta
Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
+0.1
+0.7
N.D.
+0.7
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.3
+0.3
+0.7
N.D.
+0.7
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