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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum IBSBF1503
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RALBFv3_RS03890 and RALBFv3_RS03895 are separated by 2 nucleotides
RALBFv3_RS03895 and RALBFv3_RS03900 overlap by 4 nucleotides
RALBFv3_RS03900 and RALBFv3_RS23660 overlap by 1 nucleotides
RALBFv3_RS23660 and RALBFv3_RS23665 are separated by 106 nucleotides
RALBFv3_RS03890: RALBFv3_RS03890 - amino acid ABC transporter permease, at 857,267 to 857,962
_RS03890
RALBFv3_RS03895: RALBFv3_RS03895 - amino acid ABC transporter permease, at 857,965 to 858,657
_RS03895
RALBFv3_RS03900: RALBFv3_RS03900 - amino acid ABC transporter ATP-binding protein, at 858,654 to 859,397
_RS03900
RALBFv3_RS23660: RALBFv3_RS23660 - hypothetical protein, at 859,397 to 859,648
_RS23660
RALBFv3_RS23665: RALBFv3_RS23665 - hypothetical protein, at 859,755 to 859,986
_RS23665
Group
Condition
RALBFv3
_RS03890
RALBFv3
_RS03895
RALBFv3
_RS03900
RALBFv3
_RS23660
RALBFv3
_RS23665
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
-0.3
+0.2
-0.9
-0.3
-0.7
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.1
-0.1
-0.2
-0.7
-1.0
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
-0.2
-0.4
-0.6
-0.3
-0.6
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.1
-0.3
-0.3
-0.9
-0.6
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
+0.2
+0.1
-1.2
-0.8
in planta
Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
+0.2
-0.1
-0.9
-0.4
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.5
+0.1
-0.5
-0.6
-0.7
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.6
-0.4
+0.9
-1.1
-1.3
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.6
-0.4
-0.3
-0.5
-0.7
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.5
-0.3
-0.7
+0.2
+0.2
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.7
-0.2
-0.7
+0.1
+0.4
in planta
tomato xylem local (total stem)
+0.3
-0.2
-0.9
+0.0
-0.4
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.5
-0.1
-0.2
-0.5
-0.8
in planta
Plant=Tomato cv. C42M; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
+0.3
+0.1
-0.9
-0.1
-0.3
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.6
-0.5
-0.3
+0.4
+0.1
in planta
tomato xylem local (total stem)
+0.4
-0.4
+0.3
-0.4
-0.9
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
+0.3
-0.7
-0.5
-0.1
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
+0.0
-1.1
+0.9
-0.5
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.6
-0.4
-0.2
-0.4
-0.2
in planta
Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.5
+0.2
+0.2
-1.2
+0.1
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
+0.5
-0.5
-0.4
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.6
+0.2
-0.1
-0.4
-0.3
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
+0.5
+0.3
+0.1
-0.6
-0.3
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
+0.0
-0.4
+0.9
-0.8
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.6
-0.1
+0.8
-0.7
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.6
-0.5
+0.9
-0.5
+0.0
in planta
tomato xylem local (total stem)
+0.6
+0.1
-0.4
+0.7
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.8
+0.1
+1.0
-0.7
-0.6
in planta
Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.7
+0.1
-0.3
-0.5
+0.9
in planta
Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
+0.5
-0.5
-0.1
+1.4
+0.1
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RALBFv3_RS03900
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RALBFv3_RS23660
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RALBFv3_RS23665
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