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Cofit
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4182 and Psyr_RNA63 are separated by 112 nucleotides
Psyr_RNA63 and Psyr_RNA64 are separated by 95 nucleotides
Psyr_RNA64 and Psyr_4183 are separated by 46 nucleotides
Psyr_4183 and Psyr_4184 are separated by 4 nucleotides
Psyr_4182: Psyr_4182 - Protein of unknown function DUF150, at 4,975,660 to 4,976,136
_4182
Psyr_RNA63: Psyr_RNA63 - tRNA-Met, at 4,976,249 to 4,976,325
_RNA63
Psyr_RNA64: Psyr_RNA64 - tRNA-Leu, at 4,976,421 to 4,976,506
_RNA64
Psyr_4183: Psyr_4183 - protein translocase subunit secG, at 4,976,553 to 4,976,933
_4183
Psyr_4184: Psyr_4184 - triosephosphate isomerase, at 4,976,938 to 4,977,693
_4184
Group
Condition
Psyr
_4182
Psyr
_RNA63
Psyr
_RNA64
Psyr
_4183
Psyr
_4184
in planta
apoplastic; Green bean; 13 days
N.D.
N.D.
N.D.
-3.7
N.D.
in planta
apoplastic, grinding recovery; Green bean
N.D.
N.D.
N.D.
-1.4
N.D.
in planta
epiphytic; Green bean
N.D.
N.D.
N.D.
-1.2
N.D.
in planta
apoplastic; Pepper
N.D.
N.D.
N.D.
-1.1
N.D.
stress
KB with Rotenone 0.25 mg/ml
N.D.
N.D.
N.D.
-1.0
N.D.
stress
KB with L-alliin 10 mM
N.D.
N.D.
N.D.
-0.9
N.D.
carbon source
Citric Acid (C)
N.D.
N.D.
N.D.
-0.9
N.D.
stress
KB with Avocatin B 10 mM
N.D.
N.D.
N.D.
-0.9
N.D.
aphid
library passed through aphids in food, 72 hours
N.D.
N.D.
N.D.
-0.9
N.D.
stress
KB with Nitrofurantoin 0.25 mg/ml
N.D.
N.D.
N.D.
-0.9
N.D.
stress
KB with Conessine 10 mM
N.D.
N.D.
N.D.
-0.8
N.D.
in planta
apoplastic; Pepper
N.D.
N.D.
N.D.
-0.8
N.D.
stress
KB with Harmol 10 mM
N.D.
N.D.
N.D.
-0.8
N.D.
carbon source
4-hydroxybutyric (C)
N.D.
N.D.
N.D.
-0.8
N.D.
aphid
library passed through aphids in food, 24 hours
N.D.
N.D.
N.D.
-0.8
N.D.
stress
KB with Levodopa 10 mM
N.D.
N.D.
N.D.
-0.8
N.D.
stress
KB with Resveratrol 10 mM
N.D.
N.D.
N.D.
-0.7
N.D.
stress
KB with Fusaric 250 ug/ml
N.D.
N.D.
N.D.
+0.7
N.D.
in planta
apoplastic; Pepper
N.D.
N.D.
N.D.
+0.7
N.D.
in planta
apoplastic; Pepper
N.D.
N.D.
N.D.
+0.8
N.D.
stress
KB with Gambogic Acid 10 mM
N.D.
N.D.
N.D.
+0.8
N.D.
stress
KB with Nalidixic 12.5 ug/ml
N.D.
N.D.
N.D.
+0.8
N.D.
stress
KB with Peucenin 10 mM
N.D.
N.D.
N.D.
+0.8
N.D.
stress
KB with Isosafrole 10 mM
N.D.
N.D.
N.D.
+0.8
N.D.
stress
KB with Acriflavine 7.75 ug/ml
N.D.
N.D.
N.D.
+0.9
N.D.
stress
KB with Harmalol 10 mM
N.D.
N.D.
N.D.
+0.9
N.D.
stress
KB with Cyclopamine 10 mM
N.D.
N.D.
N.D.
+1.0
N.D.
stress
KB with Chloramphenicol 12.5 ug/ml
N.D.
N.D.
N.D.
+1.3
N.D.
in planta
Green bean; epiphytic
N.D.
N.D.
N.D.
+2.5
N.D.
in planta
Green bean; epiphytic
N.D.
N.D.
N.D.
+3.1
N.D.
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