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Gene
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Cofit
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0850 and Psyr_0851 overlap by 1 nucleotides
Psyr_0851 and Psyr_RNA13 are separated by 500 nucleotides
Psyr_RNA13 and Psyr_RNA14 are separated by 123 nucleotides
Psyr_RNA14 and Psyr_RNA15 are separated by 30 nucleotides
Psyr_0850: Psyr_0850 - Oxidoreductase, molybdopterin binding protein, at 962,540 to 963,553
_0850
Psyr_0851: Psyr_0851 - Protein of unknown function UPF0191, at 963,553 to 964,185
_0851
Psyr_RNA13: Psyr_RNA13 - 16S ribosomal RNA, at 964,686 to 966,223
_RNA13
Psyr_RNA14: Psyr_RNA14 - tRNA-Ile, at 966,347 to 966,423
_RNA14
Psyr_RNA15: Psyr_RNA15 - tRNA-Ala, at 966,454 to 966,529
_RNA15
Group
Condition
Psyr
_0850
Psyr
_0851
Psyr
_RNA13
Psyr
_RNA14
Psyr
_RNA15
stress
KB with Novobiocin 250 ug/ml
-0.2
-0.5
N.D.
N.D.
N.D.
in planta
apoplastic; Green bean; 13 days
-0.2
-0.4
N.D.
N.D.
N.D.
stress
KB with Mitomycin C 0.625 ug/ml
-0.3
-0.2
N.D.
N.D.
N.D.
stress
KB with Berberine 250 ug/ml
-0.3
-0.2
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
-0.3
-0.1
N.D.
N.D.
N.D.
in planta
apoplastic, grinding recovery; Green bean
-0.1
-0.3
N.D.
N.D.
N.D.
carbon source
4-hydroxybutyric (C)
-0.1
-0.3
N.D.
N.D.
N.D.
stress
KB with Acriflavine 7.75 ug/ml
-0.1
-0.2
N.D.
N.D.
N.D.
carbon source
Sucrose (C)
-0.2
-0.2
N.D.
N.D.
N.D.
carbon source
L-Proline (C)
-0.2
-0.1
N.D.
N.D.
N.D.
in planta
apoplastic; Pepper
-0.1
-0.1
N.D.
N.D.
N.D.
carbon source
4-Aminobutyric (C)
+0.0
-0.2
N.D.
N.D.
N.D.
carbon source
Glycerol (C)
+0.1
-0.3
N.D.
N.D.
N.D.
stress
KB with 2,5-Dihydroxybenzoic Acid 10 mM
+0.1
-0.2
N.D.
N.D.
N.D.
stress
KB with Peucenin 10 mM
+0.1
-0.2
N.D.
N.D.
N.D.
stress
KB with Hydrastine (1R, 9S) 10 mM
+0.1
-0.2
N.D.
N.D.
N.D.
stress
KB with Fusaric 250 ug/ml
+0.1
-0.2
N.D.
N.D.
N.D.
stress
KB with Levodopa 10 mM
+0.1
-0.1
N.D.
N.D.
N.D.
stress
KB with Dihydrodehydroerosone 10 mM
+0.1
-0.1
N.D.
N.D.
N.D.
in planta
apoplastic, sonication recovery; Green bean
-0.1
+0.2
N.D.
N.D.
N.D.
stress
KB with Phloretin 250 ug/ml
+0.2
+0.1
N.D.
N.D.
N.D.
stress
KB with Avocatin B 10 mM
+0.1
+0.1
N.D.
N.D.
N.D.
stress
KB with Dimethyl Sulfoxide 1.25 vol%
+0.2
+0.1
N.D.
N.D.
N.D.
in planta
epiphytic; Lima bean
+0.1
+0.2
N.D.
N.D.
N.D.
stress
KB with Flavone 0.25 mg/ml
+0.1
+0.2
N.D.
N.D.
N.D.
stress
KB with Carbenicillin 250 ug/ml
+0.1
+0.2
N.D.
N.D.
N.D.
in planta
epiphytic; Green bean
+0.2
+0.2
N.D.
N.D.
N.D.
in planta
apoplastic, chopping recovery; Green bean
+0.2
+0.2
N.D.
N.D.
N.D.
in planta
epiphytic; Green bean
+0.1
+0.2
N.D.
N.D.
N.D.
in planta
epiphytic; Green bean
+0.3
+0.3
N.D.
N.D.
N.D.
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