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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_5113 and Psyr_5114 are separated by 11 nucleotides
Psyr_5114 and Psyr_5115 are separated by 281 nucleotides
Psyr_5115 and Psyr_5116 are separated by 3 nucleotides
Psyr_5116 and Psyr_5117 are separated by 682 nucleotides
Psyr_5113: Psyr_5113 - hypothetical protein, at 6,065,502 to 6,065,903
_5113
Psyr_5114: Psyr_5114 - hypothetical protein, at 6,065,915 to 6,067,318
_5114
Psyr_5115: Psyr_5115 - Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, at 6,067,600 to 6,071,217
_5115
Psyr_5116: Psyr_5116 - hypothetical protein, at 6,071,221 to 6,071,856
_5116
Psyr_5117: Psyr_5117 - glutamine--fructose-6-phosphate transaminase, at 6,072,539 to 6,074,374
_5117
Group
Condition
Psyr
_5113
Psyr
_5114
Psyr
_5115
Psyr
_5116
Psyr
_5117
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.3
-0.2
-0.1
-0.2
N.D.
in planta
apoplastic, chopping recovery; Green bean
-0.3
-0.2
-0.0
-0.2
N.D.
stress
KB with Rotenone 0.25 mg/ml
-0.2
-0.2
-0.1
-0.2
N.D.
stress
KB with Rotenone 0.125 mg/ml
-0.3
-0.1
-0.1
-0.1
N.D.
stress
KB with Nitrofurantoin 125 ug/ml
-0.2
-0.3
-0.1
-0.1
N.D.
carbon source
Glycerol (C)
-0.3
-0.1
-0.1
-0.1
N.D.
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
-0.1
-0.3
+0.0
-0.2
N.D.
carbon source
Succinic Acid (C)
-0.5
-0.1
-0.0
-0.0
N.D.
stress
KB with Novobiocin 250 ug/ml
-0.1
-0.1
-0.2
-0.2
N.D.
stress
KB with Nitrofurantoin 0.25 mg/ml
-0.1
-0.1
-0.1
-0.3
N.D.
in planta
apoplastic, grinding recovery; Green bean
-0.0
-0.0
-0.0
-0.5
N.D.
stress
KB with Cantharidin 10 mM
-0.2
-0.1
-0.1
-0.1
N.D.
stress
KB with Mitomycin C 0.625 ug/ml
+0.5
-0.7
-0.2
-0.2
N.D.
stress
KB with Fusaric 250 ug/ml
-0.2
-0.2
-0.0
-0.0
N.D.
stress
KB with capsaicin 0.125 mg/ml
-0.2
-0.2
-0.1
-0.1
N.D.
stress
KB with Theaflavin 10 mM
-0.1
-0.3
-0.1
-0.0
N.D.
stress
KB with Chrysin 10 mM
-0.1
-0.3
-0.1
-0.0
N.D.
stress
KB with Rifampicin 0.1 mg/ml
-0.2
-0.1
-0.1
-0.2
N.D.
stress
KB with Naringin 250 ug/ml
-0.2
+0.1
+0.0
-0.2
N.D.
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.2
-0.3
-0.0
-0.2
N.D.
stress
KB with Veratric Acid 10 mM
+0.2
-0.2
-0.2
-0.1
N.D.
in planta
epiphytic; Green bean
-0.1
+0.2
-0.0
-0.3
N.D.
carbon source
4-Aminobutyric (C)
-0.4
+0.2
-0.0
+0.1
N.D.
carbon source
D-Mannose (C)
-0.3
+0.2
-0.1
+0.1
N.D.
in planta
epiphytic; Green bean
+0.0
+0.3
-0.1
-0.1
N.D.
in planta
epiphytic; Green bean
-0.0
+0.3
+0.1
-0.3
N.D.
stress
KB with Lupeol 10 mM
-0.2
+0.1
-0.0
+0.2
N.D.
stress
KB with Dimethyl Sulfoxide 1.25 vol%
+0.3
+0.1
-0.1
+0.2
N.D.
in planta
apoplastic; Green bean; 13 days
-0.1
+0.1
+0.0
+0.5
N.D.
stress
KB with Harmol 10 mM
+0.0
+0.2
+0.0
+0.4
N.D.
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