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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_5088 and Psyr_5089 overlap by 1 nucleotides
Psyr_5089 and Psyr_5090 are separated by 51 nucleotides
Psyr_5090 and Psyr_5091 are separated by 24 nucleotides
Psyr_5091 and Psyr_5092 are separated by 468 nucleotides
Psyr_5088: Psyr_5088 - regulatory protein, LuxR:Response regulator receiver, at 6,037,440 to 6,038,078
_5088
Psyr_5089: Psyr_5089 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 6,038,078 to 6,039,145
_5089
Psyr_5090: Psyr_5090 - ABC transporter, at 6,039,197 to 6,040,498
_5090
Psyr_5091: Psyr_5091 - Binding-protein-dependent transport systems inner membrane component, at 6,040,523 to 6,042,277
_5091
Psyr_5092: Psyr_5092 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 6,042,746 to 6,044,668
_5092
Group
Condition
Psyr
_5088
Psyr
_5089
Psyr
_5090
Psyr
_5091
Psyr
_5092
stress
DMSO
-4.4
-4.9
-3.8
-4.1
-0.0
stress
MBOA 0.5 mM
-5.3
-3.5
-4.6
-3.9
-0.0
no stress control
no stress control
-4.5
-3.9
-4.7
-3.8
-0.1
no stress control
no stress control
-4.9
-3.8
-3.8
-4.2
-0.0
stress
DMSO
-4.7
-3.6
-3.9
-4.3
-0.2
no stress control
no stress control
-4.7
-3.1
-4.1
-4.5
-0.2
stress
DMSO
-5.0
-3.9
-3.3
-4.0
-0.1
stress
MBOA 0.5 mM
-4.7
-3.9
-3.3
-4.0
-0.1
stress
MBOA 0.5 mM
-5.4
-3.6
-3.3
-3.7
-0.1
stress
MBOA 1.2 mM
-5.2
-3.7
-3.5
-3.4
-0.1
stress
MBOA 1.2 mM
-4.4
-3.7
-3.6
-3.9
-0.1
no stress control
no stress control
-4.0
-3.5
-3.7
-4.2
-0.2
stress
MBOA 1.2 mM
-4.0
-3.3
-4.2
-3.6
-0.3
stress
MBOA 0.5 mM
-4.7
-3.4
-3.1
-3.8
-0.2
stress
MBOA 2.5 mM
-5.3
-2.3
-3.8
-3.6
+0.0
stress
MBOA 2.5 mM
-4.2
-3.4
-3.4
-3.6
-0.1
stress
MBOA 1.2 mM
-3.8
-3.0
-3.8
-3.5
-0.1
stress
MBOA 2.5 mM
-3.6
-3.3
-3.1
-3.5
-0.1
aphid
library passed through aphids in food, 72 hours
-0.6
-0.5
-0.5
-0.4
-0.1
in planta
apoplastic; Lima bean
-0.2
-0.8
-0.9
+0.1
-0.1
kb
KB
-0.4
-0.5
-0.1
-0.1
-0.1
carbon source
Fumaric (C)
-0.3
-0.2
-0.4
-0.3
+0.1
in planta
apoplastic; Lima bean
+0.0
-0.5
-0.6
+0.2
-0.0
aphid
library passed through aphids in food, 72 hours
-0.5
+0.2
-0.4
-0.1
+0.2
in planta
apoplastic; Green bean; 13 days
+0.4
+0.3
-0.3
-0.1
+0.2
stress
KB with Chloramphenicol 12.5 ug/ml
+0.1
+0.5
+0.2
+0.2
-0.2
in planta
epiphytic; Lima bean
+0.8
-0.0
+0.2
+0.2
-0.2
in planta
epiphytic; Lima bean
+0.4
+0.0
+0.6
-0.1
+0.1
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.0
+0.6
+0.2
-0.1
+0.4
stress
KB with Mitomycin C 0.625 ug/ml
+0.1
+0.6
+0.2
+0.0
+0.4
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