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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_5086 and Psyr_5087 are separated by 94 nucleotides
Psyr_5087 and Psyr_5088 are separated by 102 nucleotides
Psyr_5088 and Psyr_5089 overlap by 1 nucleotides
Psyr_5089 and Psyr_5090 are separated by 51 nucleotides
Psyr_5086: Psyr_5086 - membrane protein, putative, at 6,034,121 to 6,035,359
_5086
Psyr_5087: Psyr_5087 - Acyltransferase 3, at 6,035,454 to 6,037,337
_5087
Psyr_5088: Psyr_5088 - regulatory protein, LuxR:Response regulator receiver, at 6,037,440 to 6,038,078
_5088
Psyr_5089: Psyr_5089 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 6,038,078 to 6,039,145
_5089
Psyr_5090: Psyr_5090 - ABC transporter, at 6,039,197 to 6,040,498
_5090
Group
Condition
Psyr
_5086
Psyr
_5087
Psyr
_5088
Psyr
_5089
Psyr
_5090
stress
MBOA 0.5 mM
+0.1
+0.0
-5.3
-3.5
-4.6
stress
DMSO
+0.1
-0.2
-4.4
-4.9
-3.8
no stress control
no stress control
+0.1
-0.0
-4.5
-3.9
-4.7
stress
MBOA 1.2 mM
+0.0
+0.0
-5.2
-3.7
-3.5
stress
DMSO
-0.0
-0.0
-4.7
-3.6
-3.9
no stress control
no stress control
+0.2
+0.2
-4.9
-3.8
-3.8
stress
MBOA 0.5 mM
+0.0
-0.0
-4.7
-3.9
-3.3
stress
MBOA 0.5 mM
+0.2
+0.1
-5.4
-3.6
-3.3
stress
DMSO
+0.1
+0.2
-5.0
-3.9
-3.3
stress
MBOA 1.2 mM
-0.1
+0.1
-4.4
-3.7
-3.6
no stress control
no stress control
+0.2
+0.2
-4.7
-3.1
-4.1
stress
MBOA 2.5 mM
-0.1
+0.0
-5.3
-2.3
-3.8
stress
MBOA 1.2 mM
+0.1
+0.0
-4.0
-3.3
-4.2
no stress control
no stress control
-0.0
+0.0
-4.0
-3.5
-3.7
stress
MBOA 0.5 mM
-0.1
+0.1
-4.7
-3.4
-3.1
stress
MBOA 2.5 mM
-0.1
+0.2
-4.2
-3.4
-3.4
stress
MBOA 1.2 mM
+0.2
+0.1
-3.8
-3.0
-3.8
stress
MBOA 2.5 mM
+0.1
-0.1
-3.6
-3.3
-3.1
aphid
library passed through aphids in food, 72 hours
-0.1
+0.1
-0.6
-0.5
-0.5
in planta
apoplastic; Lima bean
+0.2
+0.1
-0.2
-0.8
-0.9
kb
KB
+0.0
-0.1
-0.4
-0.5
-0.1
in planta
apoplastic; Lima bean
+0.2
+0.1
+0.0
-0.5
-0.6
aphid
library passed through aphids in food, 72 hours
-0.1
+0.2
-0.5
+0.2
-0.4
stress
KB with Avocatin A 10 mM
+0.3
+0.3
+0.1
-0.3
-0.2
in planta
Green bean; epiphytic
-0.4
-0.0
+0.4
+0.2
+0.3
in planta
apoplastic; Green bean; 13 days
+0.3
+0.2
+0.4
+0.3
-0.3
in planta
epiphytic; Lima bean
+0.2
-0.1
+0.4
+0.0
+0.6
stress
KB with Naringin 250 ug/ml
+0.3
+0.2
+0.2
+0.2
+0.4
stress
KB with Mitomycin C 0.625 ug/ml
+0.1
+0.4
+0.1
+0.6
+0.2
aphid
library passed through aphids in food, 72 hours
+0.3
+0.4
+0.2
+0.3
+0.3
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