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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_5051 and Psyr_5052 are separated by 281 nucleotides
Psyr_5052 and Psyr_5053 are separated by 29 nucleotides
Psyr_5053 and Psyr_5054 are separated by 55 nucleotides
Psyr_5054 and Psyr_5055 are separated by 119 nucleotides
Psyr_5051: Psyr_5051 - Aspartate ammonia-lyase, at 5,992,080 to 5,993,504
_5051
Psyr_5052: Psyr_5052 - Sodium:alanine symporter, at 5,993,786 to 5,995,237
_5052
Psyr_5053: Psyr_5053 - asparaginase, at 5,995,267 to 5,996,271
_5053
Psyr_5054: Psyr_5054 - Protein of unknown function UPF0187, at 5,996,327 to 5,997,214
_5054
Psyr_5055: Psyr_5055 - YeeE/YedE, at 5,997,334 to 5,998,545
_5055
Group
Condition
Psyr
_5051
Psyr
_5052
Psyr
_5053
Psyr
_5054
Psyr
_5055
in planta
apoplastic, grinding recovery; Green bean
-0.9
-0.5
-1.8
-0.2
-0.4
in planta
apoplastic, sonication recovery; Green bean
+0.1
-0.3
-1.4
-0.1
-1.9
in planta
apoplastic, sonication recovery; Green bean
-0.2
-0.4
-0.8
-0.2
-1.6
nophagecontrol
TIme6-nophage
-1.0
-0.0
-1.2
+0.0
-0.1
in planta
apoplastic; Lima bean
-0.6
-0.2
-1.2
+0.1
-0.3
nophagecontrol
TIme6-nophage
-0.8
-0.1
-1.5
+0.2
+0.0
in planta
apoplastic; Green bean; 6 days
-0.5
-0.2
-1.3
-0.2
+0.0
in planta
apoplastic; Lima bean
-0.3
-0.1
-1.2
+0.2
-0.3
in planta
apoplastic, chopping recovery; Green bean
-0.4
-0.1
-0.7
-0.2
-0.1
aphid
library passed through aphids in food, 72 hours
-0.4
-0.4
+0.2
-0.3
-0.5
in planta
epiphytic; Green bean
-0.7
+0.1
-0.1
-0.0
-0.6
carbon source
Citric Acid (C)
-0.5
-0.2
-0.6
+0.1
-0.2
stress
KB with Harmalol 10 mM
-0.3
+0.2
-1.0
+0.0
-0.1
in planta
apoplastic, grinding recovery; Green bean
-0.2
-0.3
-0.8
+0.2
-0.0
in planta
apoplastic; Green bean; 6 days
-0.3
-0.2
-1.0
+0.0
+0.4
aphid
library passed through aphids in food, 72 hours
-0.6
-0.3
+0.7
+0.2
-0.8
stress
KB with Levodopa 10 mM
-0.1
+0.3
-0.5
-0.1
-0.4
in planta
apoplastic; Lima bean
-0.2
-0.2
-0.6
-0.1
+0.4
in planta
apoplastic; Green bean; 13 days
+0.5
-0.3
-0.9
+0.5
-0.3
stress
KB with Acridine orange 62.5 ug/ml
-0.4
+0.3
-0.5
+0.2
+0.0
stress
KB with Avocatin B 10 mM
+0.2
+0.4
-0.4
-0.0
-0.5
in planta
apoplastic; Lima bean
+0.2
-0.2
-0.8
+0.0
+0.5
stress
KB with Harmol 10 mM
+0.0
+0.3
-0.8
+0.2
+0.1
aphid
library passed through aphids in food, 72 hours
-0.1
-0.0
+0.8
-0.1
-0.5
stress
KB with Fusaric 250 ug/ml
-1.0
-0.1
+0.5
+0.2
+0.5
in planta
epiphytic; Lima bean
+0.3
+0.2
-0.6
+0.3
-0.0
in planta
epiphytic; Lima bean
-0.0
+0.2
-0.6
+0.2
+0.7
stress
KB with Dimethyl Sulfoxide 1.25 vol%
+0.4
+0.4
-0.1
+0.2
-0.5
stress
KB with Avocadyne 10 mM
+0.5
+0.3
-0.1
+0.3
-0.1
stress
KB with Nitrofurantoin 0.25 mg/ml
+0.3
+0.8
-0.1
-0.1
+0.3
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