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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4970 and Psyr_4971 are separated by 71 nucleotides
Psyr_4971 and Psyr_4972 are separated by 99 nucleotides
Psyr_4972 and Psyr_4973 are separated by 63 nucleotides
Psyr_4973 and Psyr_4974 are separated by 33 nucleotides
Psyr_4970: Psyr_4970 - Phospholipase D/Transphosphatidylase, at 5,892,924 to 5,894,978
_4970
Psyr_4971: Psyr_4971 - Sel1-like repeat protein, at 5,895,050 to 5,896,006
_4971
Psyr_4972: Psyr_4972 - Sel1-like repeat protein, at 5,896,106 to 5,897,137
_4972
Psyr_4973: Psyr_4973 - hypothetical protein, at 5,897,201 to 5,898,283
_4973
Psyr_4974: Psyr_4974 - Rhs element Vgr protein, at 5,898,317 to 5,901,193
_4974
Group
Condition
Psyr
_4970
Psyr
_4971
Psyr
_4972
Psyr
_4973
Psyr
_4974
stress
KB with Mitomycin C 0.625 ug/ml
-0.6
-1.5
-0.8
-0.4
-0.2
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.3
-1.1
-0.6
-0.3
+0.0
stress
KB with Fusaric 250 ug/ml
-0.2
-0.5
-0.5
-0.3
-0.1
stress
KB with Novobiocin 250 ug/ml
-0.2
-0.2
-0.6
-0.4
-0.2
stress
KB with Acridine orange 62.5 ug/ml
-0.1
-0.6
-0.5
-0.3
+0.1
stress
KB with Fusaric 250 ug/ml
-0.2
-0.4
-0.5
-0.2
-0.0
aphid
library passed through aphids in food, 72 hours
-0.4
-0.6
-0.4
+0.2
-0.0
stress
KB with Anisodamine Hydrobromide () 10 mM
-0.1
-0.4
-0.5
-0.0
-0.0
stress
KB with Berberine 250 ug/ml
-0.2
-0.4
-0.2
-0.0
-0.2
stress
KB with Dimethyl Sulfoxide 1 vol%
-0.0
-0.2
-0.4
-0.2
-0.2
stress
KB with Nalidixic 12.5 ug/ml
-0.2
-0.2
-0.5
+0.0
-0.1
stress
KB with Gossypol-Acetic Acid Complex 10 mM
-0.2
-0.1
-0.2
-0.3
-0.1
kb
KB
-0.1
-0.4
-0.3
+0.1
-0.1
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
-0.1
-0.1
-0.6
+0.1
-0.1
aphid
library passed through aphids in food, 72 hours
-0.2
-0.5
+0.1
-0.1
-0.1
stress
KB with Acriflavine 7.75 ug/ml
-0.1
-0.1
-0.5
+0.0
-0.1
in planta
epiphytic; Lima bean
-0.3
-0.4
+0.1
-0.2
+0.1
stress
KB with Trimethoprim 125 ug/ml
-0.1
-0.2
-0.3
+0.1
-0.2
aphid
library passed through aphids in food, 72 hours
-0.1
-0.4
-0.0
+0.1
-0.2
in planta
epiphytic; Green bean
-0.2
-0.2
+0.1
-0.4
+0.1
in planta
apoplastic; Green bean; 13 days
+0.1
-0.3
+0.2
-0.3
-0.2
carbon source
a-Ketoglutaric (C)
+0.0
-0.2
-0.3
+0.2
+0.1
in planta
Green bean; epiphytic
-0.2
-0.5
+0.1
+0.4
-0.0
in planta
apoplastic, chopping recovery; Green bean
+0.0
+0.4
-0.1
-0.3
-0.1
in planta
apoplastic; Pepper
-0.1
+0.2
-0.2
+0.2
-0.1
in planta
apoplastic, grinding recovery; Green bean
-0.3
+0.3
-0.1
+0.0
+0.2
carbon source
Citric Acid (C)
+0.0
+0.2
+0.2
-0.4
+0.1
carbon source
4-Aminobutyric (C)
-0.0
+0.4
+0.3
-0.2
+0.0
in planta
apoplastic, sonication recovery; Green bean
-0.0
-0.0
+0.1
+0.6
+0.1
in planta
apoplastic, sonication recovery; Green bean
-0.1
+0.1
-0.1
+0.9
+0.2
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