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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4956 and Psyr_4957 overlap by 37 nucleotides
Psyr_4957 and Psyr_4958 overlap by 4 nucleotides
Psyr_4958 and Psyr_4959 are separated by 25 nucleotides
Psyr_4959 and Psyr_4960 overlap by 4 nucleotides
Psyr_4956: Psyr_4956 - protein of unknown function DUF879, at 5,873,877 to 5,875,709
_4956
Psyr_4957: Psyr_4957 - Protein of unknown function DUF1305, at 5,875,673 to 5,876,743
_4957
Psyr_4958: Psyr_4958 - AAA ATPase, central region:Clp, N terminal:Clp, N terminal, at 5,876,740 to 5,879,343
_4958
Psyr_4959: Psyr_4959 - conserved hypothetical protein, at 5,879,369 to 5,880,124
_4959
Psyr_4960: Psyr_4960 - protein of unknown function DUF876, at 5,880,121 to 5,881,464
_4960
Group
Condition
Psyr
_4956
Psyr
_4957
Psyr
_4958
Psyr
_4959
Psyr
_4960
in planta
apoplastic; Lima bean
-0.3
-0.2
-0.2
-0.2
-0.4
stress
KB with Veratric Acid 10 mM
+0.2
-0.1
-0.4
-0.1
-0.4
in planta
apoplastic, sonication recovery; Green bean
+0.6
+0.2
-1.2
-0.2
-0.0
in planta
apoplastic; Pepper
-0.6
+0.0
+0.1
-0.1
-0.1
carbon source
4-hydroxybutyric (C)
+0.1
-0.2
-0.3
-0.3
+0.0
in planta
apoplastic; Green bean; 13 days
-0.1
-0.4
-0.5
+0.4
-0.0
stress
KB with L-alliin 10 mM
-0.3
+0.1
-0.1
-0.2
-0.2
in planta
apoplastic, sonication recovery; Green bean
+0.5
+0.3
-1.2
-0.1
-0.1
in planta
Green bean; epiphytic
+0.1
+0.2
-0.5
-0.1
-0.2
carbon source
Glycerol (C)
+0.1
-0.2
-0.3
-0.2
+0.1
carbon source
Citric Acid (C)
+0.3
-0.1
-0.2
-0.3
-0.1
in planta
apoplastic; Lima bean
-0.1
-0.0
+0.1
+0.2
-0.5
stress
KB with capsaicin 0.125 mg/ml
-0.1
+0.1
+0.2
-0.1
-0.5
in planta
apoplastic; Pepper
-0.7
+0.2
+0.1
-0.0
+0.1
stress
KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
+0.4
-0.1
-0.4
+0.1
-0.3
stress
KB with Mitomycin C 0.625 ug/ml
-0.1
-0.4
+0.0
-0.2
+0.3
in planta
epiphytic; Green bean
-0.1
-0.0
+0.4
-0.1
-0.5
carbon source
Succinic Acid (C)
+0.1
+0.1
-0.4
-0.3
+0.2
in planta
apoplastic, chopping recovery; Green bean
-0.1
-0.1
+0.3
+0.3
-0.4
carbon source
L-Malic (C)
+0.1
-0.4
+0.1
-0.2
+0.5
stress
KB with Chrysophanol 10 mM
-0.2
+0.2
+0.3
-0.2
-0.1
stress
KB with Conessine 10 mM
-0.2
+0.1
+0.4
-0.1
-0.2
in planta
apoplastic; Pepper
+0.1
+0.2
-0.6
+0.2
+0.1
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.0
-0.3
+0.5
-0.2
-0.0
stress
MBOA 0.5 mM
+0.1
+0.1
-0.3
+0.2
+0.2
stress
KB with Terpene 10 mM
-0.2
+0.2
+0.4
+0.1
-0.0
stress
KB with 4-hydroxychalcone 10 mM
-0.2
+0.3
+0.5
+0.1
-0.1
in planta
epiphytic; Green bean
+0.5
+0.1
+0.4
-0.0
-0.1
aphid
library passed through aphids in food, 72 hours
+0.0
+0.0
+0.4
+0.2
+0.6
aphid
library passed through aphids in food, 72 hours
+0.2
+0.6
+0.4
+0.3
+0.8
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