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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4923 and Psyr_4924 are separated by 726 nucleotides
Psyr_4924 and Psyr_4925 are separated by 144 nucleotides
Psyr_4925 and Psyr_4926 are separated by 11 nucleotides
Psyr_4926 and Psyr_4927 are separated by 94 nucleotides
Psyr_4923: Psyr_4923 - transcriptional regulator, LysR family, at 5,836,551 to 5,837,453
_4923
Psyr_4924: Psyr_4924 - Protein of unknown function DUF450, at 5,838,180 to 5,839,265
_4924
Psyr_4925: Psyr_4925 - conserved hypothetical protein, at 5,839,410 to 5,840,147
_4925
Psyr_4926: Psyr_4926 - GCN5-related N-acetyltransferase, at 5,840,159 to 5,840,632
_4926
Psyr_4927: Psyr_4927 - ATP-dependent DNA helicase recG, at 5,840,727 to 5,841,323
_4927
Group
Condition
Psyr
_4923
Psyr
_4924
Psyr
_4925
Psyr
_4926
Psyr
_4927
in planta
apoplastic, sonication recovery; Green bean
+0.0
-0.3
-0.7
-0.3
-0.2
in planta
apoplastic, sonication recovery; Green bean
+0.1
-0.3
-0.6
-0.2
-0.1
stress
KB with Mitomycin C 0.625 ug/ml
-0.3
-0.4
+0.3
-0.3
-0.3
stress
KB with Fusaric 250 ug/ml
-0.1
-0.1
-0.3
-0.1
-0.2
in planta
apoplastic, grinding recovery; Green bean
+0.1
-0.1
-0.2
-0.3
-0.2
stress
KB with Quinine Hdrochloride 10 mM
-0.1
-0.1
-0.1
-0.2
-0.2
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.0
-0.1
-0.1
-0.3
-0.2
aphid
library passed through aphids in food, 72 hours
+0.0
-0.3
-0.4
-0.1
+0.1
aphid
library passed through aphids in food, 72 hours
-0.2
-0.2
-0.1
+0.2
-0.1
carbon source
Citric Acid (C)
+0.2
+0.0
-0.3
-0.0
-0.3
stress
KB with Peucenin 10 mM
-0.1
+0.1
+0.1
-0.2
-0.3
aphid
library passed through aphids in food, 72 hours
+0.0
-0.2
+0.1
-0.3
+0.1
stress
KB with Totarol 10 mM
-0.2
-0.1
+0.2
-0.0
-0.2
in planta
apoplastic; Pepper
+0.1
+0.2
-0.3
-0.1
-0.2
in planta
apoplastic; Green bean; 13 days
-0.2
-0.3
+0.1
+0.1
-0.0
in planta
apoplastic, grinding recovery; Green bean
+0.1
+0.0
-0.1
-0.4
+0.2
carbon source
Sucrose (C)
+0.1
+0.1
-0.3
+0.0
-0.1
in planta
apoplastic; Lima bean
+0.3
-0.0
-0.1
-0.2
-0.0
carbon source
4-hydroxybutyric (C)
+0.2
-0.0
-0.3
+0.1
+0.0
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.0
+0.2
-0.3
-0.1
+0.2
in planta
apoplastic; Pepper
+0.2
+0.2
-0.3
+0.0
+0.0
stress
DMSO
-0.1
+0.1
+0.1
-0.2
+0.1
in planta
apoplastic; Pepper
+0.1
-0.2
+0.3
-0.0
+0.0
stress
KB with 4-hydroxychalcone 10 mM
-0.1
-0.1
+0.2
-0.1
+0.3
in planta
apoplastic; Pepper
+0.1
-0.2
+0.3
-0.1
+0.1
stress
KB with Helenine 10 mM
-0.2
+0.0
+0.3
+0.1
+0.2
stress
KB with Plumbagin 10 mM
-0.2
-0.0
+0.4
+0.2
+0.1
carbon source
L-Malic (C)
-0.1
-0.1
+0.5
+0.1
+0.1
in planta
apoplastic; Pepper
+0.1
-0.2
+0.2
+0.2
+0.2
in planta
apoplastic; Pepper
+0.1
-0.2
+0.3
+0.1
+0.3
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