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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4880 and Psyr_4881 overlap by 2 nucleotides
Psyr_4881 and Psyr_4882 are separated by 61 nucleotides
Psyr_4882 and Psyr_4883 are separated by 40 nucleotides
Psyr_4883 and Psyr_4884 are separated by 2 nucleotides
Psyr_4880: Psyr_4880 - conserved hypothetical protein, at 5,791,998 to 5,792,438
_4880
Psyr_4881: Psyr_4881 - RNA methyltransferase TrmH, group 2, at 5,792,437 to 5,792,892
_4881
Psyr_4882: Psyr_4882 - protein translocase subunit secB, at 5,792,954 to 5,793,442
_4882
Psyr_4883: Psyr_4883 - Glutaredoxin, at 5,793,483 to 5,793,734
_4883
Psyr_4884: Psyr_4884 - Rhodanese-like protein, at 5,793,737 to 5,794,150
_4884
Group
Condition
Psyr
_4880
Psyr
_4881
Psyr
_4882
Psyr
_4883
Psyr
_4884
aphid
library passed through aphids in food, 72 hours
-1.9
-0.7
-4.4
-0.6
-1.0
aphid
library passed through aphids in food, 72 hours
-0.6
-0.1
-5.6
-0.7
-1.4
aphid
library passed through aphids in food, 72 hours
-1.5
-0.5
-5.2
-0.2
-0.6
in planta
apoplastic, sonication recovery; Green bean
+0.2
-1.4
-1.5
-0.3
-1.3
carbon source
Glycerol (C)
-0.5
-0.7
-1.9
-0.6
-0.2
in planta
apoplastic, sonication recovery; Green bean
+0.3
-1.0
-1.4
-0.1
-1.1
stress
KB with Gossypol-Acetic Acid Complex 10 mM
-0.0
-0.5
-2.1
-0.1
-0.7
in planta
apoplastic, grinding recovery; Green bean
-0.1
+0.6
-1.2
-0.8
-1.7
aphid
library passed through aphids in food, 24 hours
-0.9
-0.1
-1.4
-0.2
-0.5
in planta
apoplastic; Green bean; 6 days
+0.0
-0.6
-1.9
-0.1
-0.4
stress
KB with Anisodamine Hydrobromide () 10 mM
-0.3
-0.3
+0.1
+0.2
-2.7
stress
KB with Leucodin 10 mM
+0.0
-0.3
-0.2
-0.2
-2.2
carbon source
a-Ketoglutaric (C)
-0.1
-0.1
-2.1
-0.1
-0.4
in planta
epiphytic; Lima bean
+0.2
-0.2
-1.5
+0.0
-1.3
stress
KB with Acridine orange 62.5 ug/ml
-0.3
-0.3
-0.2
+0.3
-2.1
carbon source
4-hydroxybutyric (C)
-0.2
-0.5
-2.3
+0.1
+0.4
carbon source
Sucrose (C)
+0.3
-0.6
-1.1
+0.1
-0.9
stress
KB with Quercetin 360 ug/ml
+0.5
-0.2
-1.7
-0.2
-0.6
in planta
apoplastic, grinding recovery; Green bean
+0.7
+0.1
-1.3
-0.6
-1.1
in planta
epiphytic; Lima bean
+0.8
-0.3
-2.0
-0.3
-0.3
in planta
epiphytic; Lima bean
+0.6
-0.5
-1.0
-0.2
-0.7
in planta
apoplastic; Pepper
+0.3
-0.7
-1.0
-0.8
+0.5
stress
KB with Isovanillin 10 mM
-0.1
+0.4
+0.3
-0.1
-2.1
in planta
epiphytic; Lima bean
+0.1
+0.6
-1.1
-0.5
-0.6
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.3
-0.6
+0.7
+0.2
-1.3
stress
KB with Berberine 250 ug/ml
+0.5
+0.2
+0.2
-0.5
-1.6
in planta
apoplastic, chopping recovery; Green bean
+0.4
+0.7
-0.7
-0.3
-1.2
stress
KB with Fusaric 250 ug/ml
+0.5
+0.2
-0.4
+0.3
-1.6
stress
KB with Mitomycin C 0.625 ug/ml
-0.0
-1.4
+0.4
+1.0
-0.7
stress
KB with Avocatin B 10 mM
-0.1
-0.1
+2.5
+0.6
-0.2
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