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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4802 and Psyr_4803 are separated by 24 nucleotides
Psyr_4803 and Psyr_4804 are separated by 291 nucleotides
Psyr_4804 and Psyr_4805 are separated by 112 nucleotides
Psyr_4805 and Psyr_4806 are separated by 151 nucleotides
Psyr_4802: Psyr_4802 - Secretion protein HlyD, at 5,691,982 to 5,693,256
_4802
Psyr_4803: Psyr_4803 - Heavy metal efflux pump CzcA, at 5,693,281 to 5,696,445
_4803
Psyr_4804: Psyr_4804 - conserved hypothetical protein, at 5,696,737 to 5,697,324
_4804
Psyr_4805: Psyr_4805 - YD repeat protein, at 5,697,437 to 5,701,126
_4805
Psyr_4806: Psyr_4806 - hypothetical protein, at 5,701,278 to 5,701,649
_4806
Group
Condition
Psyr
_4802
Psyr
_4803
Psyr
_4804
Psyr
_4805
Psyr
_4806
in planta
apoplastic; Pepper
-0.8
+0.1
-1.3
+0.2
-0.5
in planta
apoplastic; Pepper
-0.7
-0.1
-0.8
+0.1
-0.4
in planta
apoplastic; Pepper
-1.0
+0.1
-1.0
+0.2
-0.1
stress
KB with Rifampicin 0.1 mg/ml
-0.2
-0.1
-0.6
-0.2
-0.6
stress
KB with capsaicin 0.25 mg/ml
-0.6
-0.1
-1.0
-0.2
+0.2
stress
KB with 2',5'-Dihydroxy-4-Methoxychalcone 10 mM
-0.3
-0.1
-0.6
-0.1
-0.5
in planta
apoplastic; Pepper
-0.8
+0.3
-0.5
+0.1
-0.7
stress
KB with Avocadene 10 mM
+0.3
-0.1
-0.9
-0.1
-0.6
stress
KB with Esculin Monohydrate 10 mM
-0.4
-0.2
-0.5
-0.1
-0.3
stress
KB with Karanjin 10 mM
+0.0
-0.1
-0.6
-0.1
-0.6
no stress control
no stress control
-0.9
+0.0
-0.4
-0.1
+0.0
stress
KB with Mitomycin C 0.625 ug/ml
-0.2
-0.0
+0.5
-0.2
-1.2
stress
KB with Isosafrole 10 mM
+0.3
+0.1
-0.9
-0.0
-0.3
stress
KB with Anisodamine Hydrobromide () 10 mM
-0.6
+0.0
+0.8
-0.0
-0.8
in planta
apoplastic; Pepper
+0.4
+0.1
-0.7
+0.1
-0.3
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
-0.3
+0.0
+0.5
-0.1
-0.6
carbon source
D-Mannose (C)
-0.9
+0.4
+0.3
-0.0
-0.0
in planta
apoplastic; Green bean; 6 days
-0.3
+0.0
+0.6
-0.0
-0.4
aphid
library passed through aphids in food, 72 hours
+0.5
+0.3
-1.6
+0.0
+0.8
in planta
apoplastic; Green bean; 13 days
+0.1
-0.1
-1.0
+0.1
+0.9
in planta
apoplastic; Green bean; 6 days
-0.4
+0.1
+1.0
+0.1
-0.3
in planta
Green bean; epiphytic
+0.4
-0.1
-0.4
-0.0
+0.6
aphid
library passed through aphids in food, 72 hours
-0.5
+0.2
+0.7
-0.0
+0.3
in planta
epiphytic; Lima bean
-0.1
+0.2
+1.0
-0.1
+0.1
in planta
apoplastic; Lima bean
+0.7
+0.1
+0.5
+0.0
-0.2
in planta
epiphytic; Lima bean
+0.5
+0.1
+1.1
-0.0
-0.4
in planta
apoplastic, grinding recovery; Green bean
+0.7
-0.0
+0.9
+0.0
-0.2
in planta
epiphytic; Green bean
+0.6
-0.0
+0.6
-0.1
+0.4
carbon source
Citric Acid (C)
+0.9
+0.2
+0.0
+0.0
+0.4
stress
KB with Terpene 10 mM
+0.6
-0.0
+0.9
-0.1
+0.2
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